Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

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Documentation for package ‘APIS’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

allFreq	Estimate the allele frequencies
APIS	APIS function that assigns with observed data
APIS_dam	Example dam genotypes
APIS_offspring	Example offspring genotypes
APIS_sire	Example sire genotypes
assignmentFortran	Assignment function to obtain the average Mendelian transmission probabilities using a Fortran library
assignmentPower	calculte the theoretical assignment power
personalThreshold	Establish personal threshold
selectParents	Select most likely parents for potent parent pairs tests
setThreshold	Set the APIS threshold