Genomic Annotation in Livestock for Positional Candidate LOci
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Documentation for package ‘GALLO’ version 1.3
Help Pages
| find_genes_qtls_around_markers | Search genes and QTLs around candidate regions |
| import_gff_gtf | Import .gtf and .gff files to be used during gene and QTL annotation, respectively |
| overlapping_among_groups | Overlapping between grouping factors |
| plot_overlapping | Plot overlapping between data and grouping factors |
| plot_qtl_info | Plot QTLs information from the find_genes_qtls_around_markers output |
| QTLenrich_plot | Plot enrichment results for QTL enrichment analysis |
| qtl_enrich | Performs a QTL enrichment analysis based in a Bootstrap simulation for each QTL class |
| relationship_plot | Plot relationship between data and grouping factors |