add.array	add.array
add.combi	add.combi
add.diag	add.diag
add.founder.kinship	add.founder.kinship
alpha_to_beta	alpha_to_beta
analyze.bv	analyze.bv
analyze.population	analyze.population
bit.snps	bit.snps
bit.storing	bit.storing
breeding.diploid	breeding.diploid
breeding.intern	breeding.intern
bv.development	bv.development
bv.development.box	bv.development.box
bv.standardization	bv.standardization
calculate.bv	calculate.bv
cattle_chip	cattle_chip
check.parents	check.parents
chicken_chip	chicken_chip
clean.up	clean.up
codeOriginsR	codeOriginsR
combine.traits	combine.traits
compute.costs	compute.costs
compute.costs.cohorts	compute.costs.cohorts
compute.snps	compute.snps
compute.snps_single	compute.snps_single
creating.diploid	creating.diploid
creating.phenotypic.transform	creating.phenotypic.transform
creating.trait	creating.trait
decodeOriginsR	decodeOriginsR
demiraculix	demiraculix
derive.loop.elements	derive.loop.elements
diag.mobps	diag.mobps
edges.fromto	edges.fromto
edit_animal	edit_animal
effect.estimate.add	effect.estimate.add
effective.size	effective.size
epi	epi
ex_json	ex_json
ex_pop	ex_pop
find.chromo	find.chromo
find.snpbefore	find.snpbefore
founder.simulation	founder.simulation
generation.individual	generation.individual
get.admixture	get.admixture
get.age.point	get.age.point
get.bv	get.bv
get.bve	get.bve
get.class	get.class
get.cohorts	get.cohorts
get.creating.type	get.creating.type
get.cullingtime	get.cullingtime
get.database	get.database
get.death.point	get.death.point
get.dendrogram	get.dendrogram
get.dendrogram.heatmap	get.dendrogram.heatmap
get.dendrogram.trait	get.dendrogram.trait
get.distance	get.distance
get.effect.freq	get.effect.freq
get.effective.size	get.effective.size
get.geno	get.geno
get.genotyped	get.genotyped
get.genotyped.snp	get.genotyped.snp
get.haplo	get.haplo
get.id	get.id
get.individual.loc	get.individual.loc
get.infos	get.infos
get.map	get.map
get.npheno	get.npheno
get.pca	get.pca
get.pedigree	get.pedigree
get.pedigree2	get.pedigree2
get.pedigree3	get.pedigree3
get.pedmap	get.pedmap
get.pheno	get.pheno
get.pheno.off	get.pheno.off
get.pheno.off.count	get.pheno.off.count
get.phylogenetic.tree	get.phylogenetic.tree
get.qtl	get.qtl
get.qtl.effects	get.qtl.effects
get.qtl.variance	get.qtl.variance
get.recombi	get.recombi
get.reliabilities	get.reliabilities
get.selectionbve	get.selectionbve
get.selectionindex	get.selectionindex
get.time.point	get.time.point
get.vcf	get.vcf
group.diff	group.diff
insert.bve	insert.bve
json.simulation	json.simulation
kinship.development	kinship.development
kinship.emp	kinship.emp
kinship.emp.fast	kinship.emp.fast
kinship.exp	kinship.exp
ld.decay	ld.decay
maize_chip	maize_chip
miesenberger.index	miesenberger.index
miraculix	miraculix
mutation.intro	mutation.intro
new.base.generation	new.base.generation
OGC	OGC
pedigree.simulation	pedigree.simulation
pedmap.to.phasedbeaglevcf	pedmap.to.phasedbeaglevcf
pig_chip	pig_chip
plot.population	plot.population
set.class	set.class
set.default	set.default
sheep_chip	sheep_chip
sortd	sortd
ssGBLUP	ssGBLUP
summary.population	summary.population
vlist	vlist
