Selection and Ranking of Omics Biomarkers Combinations Made Easy
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Documentation for package ‘combiroc’ version 0.2.3
Help Pages
| classify | Classify data.frames using glm(link='binomial') models. |
| combi | Compute combinations. |
| combiroc | Taming Combinations of Biomarkers |
| combiroc_long | Reshape combiroc data in long format. |
| combs_with | Show combinations with given markers. |
| demo_data | Combiroc built-in demo data (proteomics data from Zingaretti et al. 2012 - PMC3518104) |
| demo_unclassified_data | Combiroc built-in unclassified demo data |
| load_data | Load CombiROC data. |
| load_unclassified_data | Load unclassified data. |
| markers_distribution | Show distribution of intensity values for all the markers both singularly and all together. |
| ranked_combs | Rank combinations. |
| roc_reports | Train logistic regression and compute ROC. |
| se_sp | Compute sensitivity and specificity of each combination |
| show_markers | Show the composition of combinations. |
| single_markers_statistics | Provide statistics for each marker. |