Automated Cytometry Gating and Annotation

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Documentation for package ‘cytometree’ version 2.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cytometree-package	Binary tree algorithm for cytometry data analysis.
Annotation	Annotates cell populations found using CytomeTree.
bootstrapCI	Bootstrapped Confidence Interval.
CytofTree	Binary tree algorithm for mass cytometry data analysis.
CytomeTree	Binary tree algorithm for cytometry data analysis.
cytometree	Binary tree algorithm for cytometry data analysis.
DLBCL	Diffuse large B-cell lymphoma data set from the FlowCAP-I challenge.
FmeasureC	C++ implementation of the F-measure computation
FmeasureC_no0	C++ implementation of the F-measure computation without the reference class labeled "0"
HIPC	HIPC T cell data set from HIPC program, patient 12828. The data was analyzed and gated by Stanford.
IMdata	Influenza vaccine response dataset
plot_cytopop	Plot the cell count for each population using CytomeTree.
plot_graph	Plot the binary tree built using CytomeTree.
plot_nodes	Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree.
RetrievePops	Retrieve cell populations found using Annotation.