Visualising Single-Cell Trajectories

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Documentation for package ‘dynplot’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

add_cell_coloring	Add colouring to a set of cells.
add_density_coloring	Color cells using a background density
add_milestone_coloring	Add colouring to a set of milestones.
dynplot	dynplot: Plotting Single-Cell Trajectories
empty_plot	Create an empty plot for spacing
example_bifurcating	An example bifurcating dataset
example_disconnected	An example disconnected dataset
example_linear	An example linear dataset
example_tree	An example tree dataset
get_milestone_palette_names	Get the names of valid color palettes
linearise_cells	Prepare a trajectory for linearised visualisation.
milestone_palette	Get the names of valid color palettes
plot_default	Plot a trajectory as a graph
plot_dendro	Plot a trajectory as a dendrogram
plot_dimred	Plot a trajectory in a (given) dimensionality reduction
plot_graph	Plot a trajectory as a graph
plot_heatmap	Plot expression data along a trajectory
plot_linearised_comparison	Compare two trajectories as a pseudotime scatterplot
plot_onedim	Plot a trajectory as a one-dimensional set of connected segments
plot_strip	Plot strip
plot_topology	Plot the topology of a trajectory
project_waypoints_coloured	Project the waypoints
theme_clean	We like our plots clean
theme_graph	We like our plots clean