# Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data

## Documentation for package ‘eemR’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

absorbance | CDOM absorbance data.
eem | eem constructor
eem_bind | Bind eem or eemlist
eem_biological_index | Calculate the biological fluorescence index (BIX)
eem_coble_peaks | Extract fluorescence peaks
eem_cut | Cut emission and/or excitation wavelengths from EEMs
eem_export_matlab | Export EEMs to Matlab
eem_extract | Extract EEM samples
eem_extract_blank | Extract blank EEM
eem_fluorescence_index | Calculate the fluorescence index (FI)
eem_humification_index | Calculate the fluorescence humification index (HIX)
eem_inner_filter_effect | Inner-filter effect correction
eem_names | The names of an eem or eemlist objects
eem_names<- | Set the sample names of an eem or eemlist objects
eem_peaks | Extract fluorescence peaks
eem_raman_normalisation | Fluorescence Intensity Calibration Using the Raman Scatter Peak of Water
eem_read | Read excitation-emission fluorescence matrix (eem)
eem_remove_blank | Blank correction
eem_remove_scattering | Remove Raman and Rayleigh scattering
eem_set_wavelengths | Set Excitation and/or Emission wavelengths
plot.eemlist | Surface plot of eem
print.eemlist | Display summary of an eemlist object
summary.eemlist | Display summary of an eemlist object