Transform Files to 'microtable' Object with 'microeco' Package

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Documentation for package ‘file2meco’ version 0.5.0

• DESCRIPTION file.

Help Pages

check_match_table	Replace the names use match table
check_sample_table	Read sample table
CHOCOPhlAn_taxonomy	The CHOCOPhlAn_taxonomy data
humann2meco	Transform 'HUMAnN' metagenomic results to 'microtable' object.
meco2phyloseq	Transform 'microtable' object of 'microeco' package to the 'phyloseq' object of 'phyloseq' package.
MetaCyc_pathway_map	The MetaCyc_pathway_map data
metacyc_pathway_website	Get the website for a 'MetaCyc' pathway name
mpa2meco	Transform metagenomic classification results of 'mpa' format to 'microtable' object.
ncyc2meco	Transform 'Ncyc' metagenomic abundance to 'microtable' object.
ncyc_map	The ncyc_map data
phyloseq2meco	Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.
qiime1meco	Transform 'QIIME' results to 'microtable' object.
qiime2meco	Transform 'QIIME2' results to 'microtable' object.