Gene Registration from Expression and Time-Courses in R

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Documentation for package ‘greatR’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calculate_between_sample_distance	Calculate distance between sample data before and after registration
get_approximate_stretch	Get approximate stretch factor
get_expression_of_interest	Get expression of interest
get_mean_data	Calculate mean expression values from all expression data with replicates
optimise_registration_params	Optimise registration parameters with Simulated Annealing
plot_heatmap	Visualise distances between samples from different time points
plot_registration_results	Plot gene of interest after registration
scale_and_register_data	Register or synchronize different expression profiles
summary_model_comparison	Summarise registration results