An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project'

Documentation for package ‘malariaAtlas’ version 1.0.1

Help Pages

as.MAPraster	Convert Raster objects into MAPraster objects
as.MAPshp	Convert SpatialPolygon objects into MAPshp objects
as.pr.points	Convert data.frames to pr.points objects.
as.vectorpoints	Convert data.frames to vector.points objects.
autoplot.MAPraster	Quickly visualise Rasters downloaded from MAP
autoplot.MAPshp	Create a basic plot to visualise downloaded shapefiles
autoplot.pr.points	Create a basic plot showing locations of downloaded PR points
autoplot.vector.points	Create a basic plot showing locations of downloaded Vector points
autoplot_MAPraster	Quickly visualise Rasters downloaded from MAP
convertPrevalence	convert prevalences from one age range to another
extractRaster	Extract pixel values from MAP rasters using point coordinates.
fillDHSCoordinates	Add DHS locations to malaria data
getPR	Download PR points from the MAP database
getRaster	Download Rasters produced by the Malaria Atlas Project
getShp	Download MAPadmin2013 Administrative Boundary Shapefiles from the MAP geoserver
getVecOcc	Download Vector Occurrence points from the MAP database 'getVecOcc' downloads all publicly available vector occurrence points for a specified country (or countries) and returns this as a dataframe. 'country' and 'ISO' refer to countries and a lower-level administrative regions such as French Guiana.
isAvailable	Available data to download from the MAP geoserver.
isAvailable_pr	Check whether PR points are available for a given location
isAvailable_vec	Check whether Vector Occurrence points are available for a given location
listData	List data available to download from the MAP geoserver.
listPoints	List countries with available MAP Point data.
listRaster	List all MAP Rasters available to download.
listShp	List administrative units for which shapefiles are stored on the MAP geoserver.
listSpecies	list all species which have occurrence data within the MAP database.
malariaAtlas	An R interface to open-access malaria data, hosted by the Malaria Atlas Project.