An Open-Source Loader for Bruker's timsTOF Data Files

Documentation for package ‘opentimsr’ version 1.0.13

CloseTIMS	Close the TIMS data handle and release all resources.
download_bruker_proprietary_code	Get Bruker's code needed for running proprietary time of flight to mass over charge and scan to drift time conversion.
explore.tdf.tables	Explore the contentents of the sqlite .tdf database.
length-method	Get the overall number of peaks.
min_max_measurements	Get border values for measurements.
MS1	Get MS1 frame numbers.
OpenTIMS	Get OpenTIMS data representation.
OpenTIMS-class	TimsTOF data accessor.
opentims_set_threads	Set the number of threads to be used for data processing by OpenTIMS
peaks_per_frame_cnts	Get the number of peaks per frame.
query	Query for raw data.
query_slice	Query for raw data.
range-method	Select a range of frames to extract.
retention_times	Get the retention time for each frame.
rt_query	Get the retention time for each frame.
setup_bruker_so	Dynamically link Bruker's DLL to enable tof-mz and scan-inv_ion_mobility conversion.
table2df	Extract tables from sqlite database analysis.tdf.
tables_names	Extract tables from sqlite database analysis.tdf.
[-method	Get some frames of data.