# Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data

## Documentation for package ‘pulseTD’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

correctionParams | Correct the parameters of the pulse model
estimateExpression | Estimated Expression
estimateParams | Estimated pulse model parameters!
getParams | Get pulseModel params
getParams-method | getParams-method
getRates | Get rate values
getRates-method | getRates-method
integrateA | integral function
integrateAC | integral function
plotRates | draw Method
plotRates-method | plotRate-Method
predictExpression | predict Expression
predictExpression-method | predictExpression-method
preExp | A gene list that stores predicted values of gene expression and a 0.95 confidence interval.
pulseModel | pulse function
pulseRates | A pulseTDModel Rdata file containing 100 gene expression data, transcriptional dynamic data already related parameters.
pulseTDmodel | pulseTD-model
pulseTDmodel-class | pulseTD-model
rpkmres | a list containing the expression values of exons and introns
rpkmSim | A simulated gene expressing Rdata file that contains expression data for total RNA, precursor RNA, and 4sU-labeled RNA.
splitA6Params | esitmate transcription parameters
splitB4Params | esitmate degradation parameters
splitC5Params | esitmate processing parameters