Tidy Presentation of Clinical Reporting

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Documentation for package ‘reportRmd’ version 0.0.2

Help Pages

addspace Add spaces to strings in LaTeX
boxcoxfitRx fit box cox transformed linear model
cap Capitalize a string
covsum Get covariate summary dataframe
crrRx fit crr model
ctDNA Tumour size change over time Longitudinal changes in tumour size since baseline for patients by changes in ctDNA status (clearance, decrease or increase) since baseline.
excelCol Retrieve columns number from spreadsheet columns specified as unquoted letters
forestplot2 Create a forest plot using ggplot2
formatp Specific p-value formatting
geoR_boxcoxfit Parameter Estimation for the Box-Cox Transformation
ggkmcif Plot KM and CIF curves with ggplot
ggkmcif_paste Plot KM and CIF curves with ggplot
hbld Bold strings in HTML
lbld Bold strings in LaTeX
lpvalue Formats p-values for LaTeX
mvsum Get multivariate summary dataframe
nestTable Combine two table columns into a single column with levels of one nested within levels of the other.
nicename Lean strings for printing
niceNum Round retaining digits
outTable Print tables to PDF/Latex HTML or Word
pembrolizumab Survival data Survival status and ctDNA levels for patients receiving pembrolizumab
plotuv Plot multiple bivariate relationships in a single plot
psthr Round and paste with parentheses
pstprn Paste with parentheses
pvalue Formats p-values
rmds Replace dollar signs with html for proper HTML output
rm_covsum Outputs a descriptive covariate table
rm_mvsum Format a regression model nicely for 'Rmarkdown'
rm_survdiff Display event counts, expected event counts and logrank test of differences
rm_survsum Summarise survival data by group
rm_survtime Display survival rates and events for specified times
rm_uvsum Output several univariate models nicely in a single table
rm_uv_mv Combine univariate and multivariable regression tables
sanitizestr Sanitizes strings to not break LaTeX
testData Funky ctDNA data There is a weird factor with all one level, the cohort variable contains a cohort level (and Cohort A) and for one cohort all the size changes are missing
uvsum Get univariate summary dataframe