A Method for Simulating Data from Perturbed Biological Pathways
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Documentation for package ‘simPATHy’ version 0.6
Help Pages
| chimera | Chimera data |
| easyLookDys | Dysregulation summary |
| easyLookShiny | Visual dysregulation summary |
| fitSgraph | Estimate covariance matrix of a graphical model |
| generatePath | Find one path in a graph |
| getPathShiny | Choose a path in a graph from an interactive shiny app |
| graphNELD3-shiny | Shiny bindings for plotGraphNELD3 |
| graphNELD3Output | Shiny bindings for plotGraphNELD3 |
| makePositiveDefinite | Positive definite matrix |
| plotCorGraph | Plot correlation or partial correlation matrix |
| plotGraphNELD3 | Dynamic plot of a graph |
| renderGraphNELD3 | Shiny bindings for plotGraphNELD3 |
| simPATHy | Simulate data from a graphical model |
| SMLEdecomposable | Local Maximum Likelihood Estimation |