Yet Another TAxonomy Handler

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Documentation for package ‘yatah’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

abundances	Abundance table for 199 samples.
all_clades	Extract all clades present in the lineages
is_clade	Test if a lineage belongs to a clade
is_lineage	Test if a string is a lineage
is_rank	Test if a lineage goes down to a specified rank
last_clade	Extract the last clade of a lineage
last_rank	Extract the last rank of a lineage
taxtable	Taxonomic table
taxtree	Taxonomic tree
trim_common	Trim lineages until the shallowest common rank.
trim_rank	Trim lineages until a specified rank
trim_void	Trim void ranks in lineages