Animal Network Toolkit Software

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Documentation for package ‘ANTs’ version 0.0.16

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ant	ANT diagnostic for permuted statistics
assoc.gfi	Generalized affiliation index
assoc.indices	Association indices
convert.socprog	Converts Socprog data frame
df.create	Creates an empty data frame or a list of empty data frames
df.to.gbi	Data frame to GBI.
df.to.mat	Data frame to a matrix
gbi.to.df	Group by individual matrix to linear data frame of association
import.df	Imports data frames
import.mat	Imports matrices
mat.to.edgl	Matrix to edge list
met.affinity	Affinity
met.assortativity	Assortativity
met.betweenness	Betweenness centrality
met.ci	Centralisation index
met.degree	Degree
met.density	Density
met.diameter	Diameter
met.disparity	Disparity
met.eigen	Eigenvector Centrality
met.ge	Global efficiency
met.geodesic	Geodesic distances
met.indegree	Indegree
met.instrength	Instrength
met.lp	Laplacian centrality
met.outdegree	Outdegree
met.outstrength	Outstrength
met.reach	Reach centrality
met.ri	R-Index
met.strength	Strength
perm.double.focal	Data stream permutation for focal sampling data .
perm.double.focal.single	Double permutation approach for focal sampling
perm.double.grp	Data stream permutation for association data
perm.double.grp.single	Double permutation approach for gambit of the group
perm.ds.focal	Data stream permutation for focal sampling data .
perm.ds.grp	Data stream permutation for association data
perm.net.degree	Link permutation keeping the structure
perm.net.lk	Matrix links permutations
perm.net.lk.w	Links weigths permutations
perm.net.nl	Node label permutations with or without random factor(s)
perm.net.nl.str	Nodes labels permutation keeping network structure
sampling.effort	Sampling effort
sampling.robustness	Metric robustness
sampling.uncertainty	Metric uncertainty
sim.df	Simulated data frame
sim.focal.directed	Focal sampling directed data
sim.focal.undirected	Focal sampling undirected data
sim.gbi	Group by individual (GBI) matrix
sim.gbi.att	Dyadic attributes for sim.gbi data
sim.grp	Simulated data collected through gambit of the group sampling
sim.m	Simulated Matrix of interactions
sim.socprog	Simulated Socprog data format
stat.cor	Correlation test on permuted data.
stat.deletions	Network target & random deletion simulations
stat.deletionsPlot	Plot for network deletion simulations
stat.glm	Permuted Generalized Linear Model
stat.glmm	Extracts statistical measures of interest in Generalized Linear Mixed Models
stat.glmm.no.first.model	Extracts statistical measures of interest in Generalized Linear Mixed Models
stat.glmm.parallel	Extracts statistical measures of interest in Generalized Linear Mixed Models in parallel
stat.lm	Extracts statistical measures of interest in Linear Model
stat.t	T-test on data frame
stat.tauKr	Matrix TauKr correlations
vis.post.distribution	Histogram of posterior distribution
vis.post.distribution2	Histogram of posterior distribution
which.metric	Which metric to choose
which.protocol	Which metric to choose