An R Interface to the JBrowse 2 Genome Browser

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Documentation for package ‘JBrowseR’ version 0.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

assembly	Create an assembly for a custom JBrowse view
default_session	Create a default session for a custom JBrowse view
JBrowseR	R interface to JBrowse 2 genome browser
JBrowseR-shiny	Shiny bindings for JBrowseR
JBrowseROutput	Shiny bindings for JBrowseR
JBrowseR_html	Shiny bindings for JBrowseR
json_config	Read in a JBrowse 2 JSON configuration file
renderJBrowseR	Shiny bindings for JBrowseR
serve_data	Serve a local data directory for use with a browser
text_index	Create configuration for a JBrowse 2 text index
theme	Create a theme for a custom JBrowse 2 view
tracks	Create a set of tracks for a custom JBrowse 2 view
track_alignments	Create an AlignmentsTrack for a custom JBrowse 2 view
track_data_frame	Create a track from an R data frame for a custom JBrowse 2 view
track_feature	Create a FeatureTrack for a custom JBrowse 2 view
track_variant	Create a VariantTrack for a custom JBrowse 2 view
track_wiggle	Create a WiggleTrack for a custom JBrowse 2 view