Comprehensive Feedback Loop Detection in ODE Models

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Documentation for package ‘LoopDetectR’ version 0.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

compare_loop_list	Compare two loop lists
find_edge	Detecting loops with a certain edge
find_loops	Loop detection in a matrix
find_loops_noscc	Loop detection in a matrix
find_loops_vset	Loop detection for an ODE model at multiple sets of variables
func_li08	Example ODE function: bacterial cell cycle.
func_POSm4	Example ODE function: chain model with positive regulation.
li08_solution	Solution for the cell cycle model related to func_li08
loop_summary	Summary of a loop list
sort_loop_index	Sort loop indices