Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines

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Documentation for package ‘MM2S’ version 1.0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

Frozen_ES_Rank_Matrix	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
genesetHuman	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup3	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup4	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatNormal	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatSHH	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatWNT	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GTML_Mouse_Preds	Table of Pre-computed MM2S Predictions for 32 replicates of the GTML mouse model
HumanGMT	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
Human_Cho_Expr	Gene Expression data from selected samples of the Human CHO Medulloblastoma dataset
MB_SampleInfo	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MM2S.human	MM2S Prediction of Human Medulloblastoma Samples
MM2S.mouse	MM2S Prediction of Mouse Medulloblastoma Samples
MM2Ssetup	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MouseGMT	MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
PCARender	Principal Component Analysis (PCA) Projections of ssGSEA Rank Matrix for Test Samples Onto the MM2S Training Set
PredictionsBarplot	Stacked Barplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionBoxplot	Boxplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionPie	Heatmap of MM2S Subtype Predictions for Given Samples
PredictionsHeatmap	Heatmap of MM2S Subtype Predictions for Given Samples
WNT_Mouse_Expr	Gene Expression data pertaining to the GMTL mouse mode