R Package for Aqua Culture

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Documentation for package ‘RAC’ version 1.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

Bass_ind_dataloader	Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolation
Bass_ind_equations	Seabass bioenergetic individual model differential equations
Bass_ind_main	Seabass bioenergetic individual model
Bass_ind_post	Seabass bioenergetic individual model postprocessor
Bass_ind_pre	Seabass bioenergetic individual model preprocessor
Bass_ind_RKsolver	Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method
Bass_ind_skeleton	Creates the folders structure for Seabass individual bioenergetic model
Bass_pop_dataloader	Function that loads forcings data for Seabass population model and performs the interpolation
Bass_pop_equations	Seabass bioenergetic population model differential equations
Bass_pop_loop	Function that runs the Monte Carlo simulation for the Seabass population model
Bass_pop_main	Seabass bioenergetic population model
Bass_pop_post	Postprocess the Seabass population bioenergetic model results
Bass_pop_pre	Seabass bioenergetic population model preprocessor
Bass_pop_RKsolver	Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta method
Bass_pop_skeleton	Creates the folders structure for Seabass population model
Bass_spatial_dataloader	Function that loads forcings data for Bass spatialized model and performs the interpolation
Bass_spatial_loop	Bass bioenergetic spatialized model - spatialization loop
Bass_spatial_main	Bass bioenergetic spatialized model - spatialization loop
Bass_spatial_post	Postprocess the Mussel spatialized model results
Bass_spatial_pre	Bass bioenergetic spatialized model preprocessor
Bass_spatial_pre_int	Bass bioenergetic spatialized model preprocessor - used inside spatialization loop
Bass_spatial_RKsolver	Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model
Bass_spatial_skeleton	Creates the folders structure for Bass spatialized model
Bream_ind_dataloader	Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolation
Bream_ind_equations	Seabream bioenergetic individual model differential equations
Bream_ind_main	Seabream bioenergetic individual model
Bream_ind_post	Postprocess the Seabream indivual bioenergetic model results
Bream_ind_pre	Seabream bioenergetic individual model preprocessor
Bream_ind_RKsolver	Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta method
Bream_ind_skeleton	Creates the folders structure for Seabream individual bioenergetic model
Bream_pop_dataloader	Function that loads forcings data for Seabream population model and performs the interpolation
Bream_pop_equations	Seabream bioenergetic population model differential equations
Bream_pop_loop	Function that runs the Monte Carlo simulation for the Seabream population model
Bream_pop_main	Seabream bioenergetic population model
Bream_pop_post	Postprocess the Bream population bioenergetic model results
Bream_pop_pre	Seabream bioenergetic population model preprocessor
Bream_pop_RKsolver	Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta method
Bream_pop_skeleton	Creates the folders structure for Seabream population model
Bream_spatial_dataloader	Function that loads forcings data for Bream spatialized model and performs the interpolation
Bream_spatial_loop	Bream bioenergetic spatialized model - spatialization loop
Bream_spatial_main	Bream bioenergetic spatialized model - spatialization loop
Bream_spatial_post	Postprocess the Bream spatialized model results
Bream_spatial_pre	Bream bioenergetic spatialized model preprocessor
Bream_spatial_pre_int	Bream bioenergetic spatialized model preprocessor - used inside spatialization loop
Bream_spatial_RKsolver	Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model
Bream_spatial_skeleton	Creates the folders structure for Bream spatialized model
ClamF_ind_dataloader	Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolation
ClamF_ind_equations	Clam bioenergetic individual model differential equations (alternative version)
ClamF_ind_main	Clam bioenergetic individual model (alternative version)
ClamF_ind_post	Postprocess the Clam indivual bioenergetic model (alternative version) results
ClamF_ind_pre	Clam bioenergetic individual model preprocessor (alternativer version)
ClamF_ind_RKsolver	Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method
ClamF_ind_skeleton	Creates the folders structure for Clam individual bioenergetic model (alternative version)
ClamF_pop_dataloader	Function that loads forcings data for Clam population model (alternative version) and performs the interpolation
ClamF_pop_equations	Clam bioenergetic population model differential equations (alternative version)
ClamF_pop_loop	Function that runs the Monte Carlo simulation for the Clam population model (alternative version)
ClamF_pop_main	Clam bioenergetic population model (alternative version)
ClamF_pop_post	Postprocess the Clam population bioenergetic model results (alternative model)
ClamF_pop_pre	Clam bioenergetic population model (alternative version) preprocessor
ClamF_pop_RKsolver	Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method
ClamF_pop_skeleton	Creates the folders structure for Clam population model (alternative version)
Clam_ind_dataloader	Function that loads forcings data for Clam individual bioenergetic model and performs the interpolation
Clam_ind_equations	Clam bioenergetic individual model differential equations
Clam_ind_main	Clam bioenergetic individual model
Clam_ind_post	Postprocess the Clam individual bioenergetic model results
Clam_ind_pre	Clam bioenergetic individual model preprocessor
clam_ind_RKsolver	Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta method
Clam_ind_skeleton	Creates the folders structure for Clam individual bioenergetic model
Clam_pop_dataloader	Function that loads forcings data for Clam population model and performs the interpolation
Clam_pop_equations	Clam bioenergetic population model differential equations
Clam_pop_loop	Function that runs the Monte Carlo simulation for the Clam population model
Clam_pop_main	Clam bioenergetic population model
Clam_pop_post	Postprocess the Clam population bioenergetic model results
Clam_pop_pre	Clam bioenergetic population model preprocessor
Clam_pop_RKsolver	Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta method
Clam_pop_skeleton	Creates the folders structure for Clam population model
Mussel_ind_dataloader	Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolation
Mussel_ind_equations	Mussel bioenergetic individual model differential equations
Mussel_ind_main	Mussel bioenergetic individual model
Mussel_ind_post	Postprocess the Mussel indivual bioenergetic model results
Mussel_ind_pre	Mussel bioenergetic individual model preprocessor
Mussel_ind_RKsolver	Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method
Mussel_ind_skeleton	Creates the folders structure for Mussel individual bioenergetic model
Mussel_pop_dataloader	Function that loads forcings data for Mussel population model and performs the interpolation
Mussel_pop_equations	Mussel bioenergetic population model differential equations
Mussel_pop_loop	Function that runs the Monte Carlo simulation for the Mussel population model
Mussel_pop_main	Mussel bioenergetic population model
Mussel_pop_post	Postprocess the Mussel population bioenergetic model results
Mussel_pop_pre	Mussel bioenergetic population model preprocessor
Mussel_pop_RKsolver	Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta method
Mussel_pop_skeleton	Creates the folders structure for Mussel population model
Mussel_spatial_dataloader	Function that loads forcings data for Mussel spatialized model and performs the interpolation
Mussel_spatial_loop	Mussel bioenergetic spatialized model - spatialization loop
Mussel_spatial_main	Mussel bioenergetic spatialized model - spatialization loop
Mussel_spatial_post	Postprocess the Mussel spatialized model results
Mussel_spatial_pre	Mussel bioenergetic spatialized model preprocessor
Mussel_spatial_pre_int	Mussel bioenergetic spatialized model preprocessor - used inside spatialization loop
Mussel_spatial_RKsolver	Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model
Mussel_spatial_skeleton	Creates the folders structure for Mussel spatialized model
Pop_fun	Function that solves the population dynamics equations including discontinuities