Analysing Chemodiversity of Phytochemical Data

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Documentation for package ‘chemodiv’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

alpinaCompData	Arabis alpina floral scent compounds
alpinaCompDis	Arabis alpina floral scent compound dissimilarity matrix
alpinaMolNet	Arabis alpina floral scent molecular network
alpinaNPCTable	Arabis alpina floral scent NPClassifier table
alpinaPopData	Arabis alpina populations
alpinaSampData	Arabis alpina floral scent data
alpinaSampDis	Arabis alpina floral scent sample dissimilarity matrix
calcBetaDiv	Calculate beta diversity
calcDiv	Calculate various diversity and evenness measures
calcDivProf	Calculate a diversity profile
chemodiv	chemodiv: A package for analysing phytochemical diversity
chemoDivCheck	Check data formatting
chemoDivPlot	Plot chemodiversity
compDis	Calculate compound dissimilarities
minimalCompData	Minimal compound dataset
minimalCompDis	Minimal compound dissimilarity matrix
minimalMolNet	Minimal molecular network
minimalNPCTable	Minimal NPClassifier table
minimalSampData	Minimal sample dataset
minimalSampDis	Minimal sample dissimilarity matrix
molNet	Generate a molecular network with some properties
molNetPlot	Plot molecular networks
NPCTable	Generate NPClassifier classification
quickChemoDiv	Quickly calculate or plot chemodiversity
sampDis	Calculate sample dissimilarities