Analysis of Plant Pathogen Pathotype Complexities, Distributions
and Diversity
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Documentation for package ‘hagis’ version 3.1.4
Help Pages
| autoplot.hagis.complexities | Plot hagis complexities objects |
| autoplot.hagis.gene.summary | Plot hagis summary objects |
| calculate_complexities | Calculate distribution of complexities by sample |
| calculate_diversities | Calculate diversities indices |
| create_binary_matrix | Create binary data matrix |
| diversities_table | Prints table of diversities |
| individual_pathotypes | Prints individual pathotypes for each sample |
| P_sojae_survey | _Phytophthora sojae_ survey example data |
| sample_meta | _Phytophthora sojae_ survey example metadata |
| summarize_gene | Calculate and summarize distribution of susceptibilities by gene |