Manage, Analyse and Simulate Hyperspectral Data

Documentation for package ‘hsdar’ version 1.0.4

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A B C D E F G H I L M N P Q R S T U V W misc

Manage, analyse and simulate hyperspectral data in R

-- A --

addcp	Manually add fix point to continuum line
apply-method	Apply function for class DistMat3D
apply-method	Apply function for class Speclib
apply.DistMat3D	Apply function for class DistMat3D
apply.Speclib	Apply function for class Speclib
as.array-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
as.data.frame-method	Methods for * Nri-class
as.matrix-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
as.matrix-method	Methods for * Nri-class

-- B --

bandnames	Handling names of bands
bandnames<-	Handling names of bands
bdri	Band depth ratio indices
blockSize-method	Functions for processing large hyperspectral raster files
Boruta-method	Methods for Function 'Boruta'
Boruta-methods	Methods for Function 'Boruta'
brick-method	Handle hyperspectral cubes using raster package (deprecated)
brick-method	Rasterbased methods for spectra

-- C --

cancer_spectra	Hyperspectral samples
cellFromCol-method	Handling spectra
cellFromLine-method	Handling spectra
cellFromPolygon-method	Handling spectra
cellFromRow-method	Handling spectra
cellFromRowCol-method	Handling spectra
cellFromRowColCombine-method	Handling spectra
cellFromXY-method	Handling spectra
checkhull	Check continuum line
Clman	* Clman class
Clman-class	* Clman class
colFromX-method	Handling spectra
cor.test-method	Test for association/correlation between nri values and vector of samples
cor.test.nri	Test for association/correlation between nri values and vector of samples
createDataPartition-method	Methods for Function 'createDataPartition'
createDataPartition-methods	Methods for Function 'createDataPartition'
createFolds-method	Methods for Function 'createFolds' and 'createMultiFolds'
createFolds-methods	Methods for Function 'createFolds' and 'createMultiFolds'
createMultiFolds-method	Methods for Function 'createFolds' and 'createMultiFolds'
createMultiFolds-methods	Methods for Function 'createFolds' and 'createMultiFolds'
createResample-method	Methods for Function 'createResample'
createResample-methods	Methods for Function 'createResample'
cubePlot	cubePlot
cut_specfeat	Cut absorption features

-- D --

deletecp	Delete fix point
derivative.speclib	Derivation
dim-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
dim-method	Dimensions of Speclib
dim-method	Methods for * Nri-class
dim.speclib	Dimensions of Speclib
dist.speclib	Distance between spectra
distMat3D	Methods to create, manipulate and query objects of class 'DistMat3D'.
DistMat3D-class	* DistMat3D class
distMat3D-method	Methods to create, manipulate and query objects of class 'DistMat3D'.

-- E --

extract-method

Rasterbased methods for spectra

-- F --

featurePlot-method	Methods for Function 'featurePlot'
featurePlot-methods	Methods for Function 'featurePlot'
feature_properties	Calculation of properties of features
fourCellsFromXY-method	Handling spectra
fwhm	Handling wavelength and fwhm
fwhm-method	Handling wavelength and fwhm
fwhm<-	Handling wavelength and fwhm
fwhm<--method	Handling wavelength and fwhm

-- G --

gafs-method	Methods for Function 'gafs'
gafs-methods	Methods for Function 'gafs'
get.gaussian.response	Gaussian response function
get.sensor.characteristics	Sensor characteristics
getcp	Get fix points
getFiniteNri	Methods for * Nri-class
getNRI	Return nri-values
getValuesBlock,HyperSpecRaster	Handle hyperspectral cubes using raster package (deprecated)
getValuesBlock-method	Handle hyperspectral cubes using raster package (deprecated)
getValuesBlock-method	Functions for processing large hyperspectral raster files
get_Boruta	Methods for Function 'Boruta'
get_gafs	Methods for Function 'gafs'
get_landsat4_response	Spectral resampling
get_landsat5_response	Spectral resampling
get_landsat7_response	Spectral resampling
get_landsat8_response	Spectral resampling
get_quickbird_response	Spectral resampling
get_reflectance	Get reflectance values
get_rfe	Methods for Function 'rfe'
get_safs	Methods for Function 'safs'
get_sbf	Methods for Function 'sbf'
get_sentinel2_response	Spectral resampling
get_wv2_4_response	Spectral resampling
get_wv2_8_response	Spectral resampling
glm.nri	(Generalised) Linear models from normalised ratio indices

-- H --

hsdar	Manage, analyse and simulate hyperspectral data in R
hsdardocs	Load additional documents
hsdar_parallel	hsdar_parallel
HyperSpecRaster	Handle hyperspectral cubes using raster package (deprecated)
HyperSpecRaster-class	HyperSpecRaster* class (deprecated)
HyperSpecRaster-method	Handle hyperspectral cubes using raster package (deprecated)

-- I --

idSpeclib	Handling IDs of spectra
idSpeclib<-	Handling IDs of spectra
initialize-method	Methods to create, manipulate and query objects of class 'Clman'.
initialize-method	Handling supplementary information (SI) of spectra
initialize-method	Methods to create objects of class Speclib
interpolate.mask	Mask spectra
is.speclib	Methods to create objects of class Speclib

-- L --

Landsat_4_response	Spectral resampling
Landsat_5_response	Spectral resampling
Landsat_7_response	Spectral resampling
Landsat_8_response	Spectral resampling
legendSpeclib	Plot speclib
list.available.sensors	Sensor characteristics
lm.nri	(Generalised) Linear models from normalised ratio indices

-- M --

makehull	Re-calculate hull
mark_nri_best_performance	Best performing model(s) with NRI
mask	Mask spectra
mask-method	Mask spectra
mask<-	Mask spectra
mask<--method	Mask spectra
maskSpeclib	Mask spectra
meanfilter	Apply mean filter
merge-method	Merge speclibs

-- N --

names-method	Handling supplementary information (SI) of spectra
nbands	Dimensions of Speclib
ncol-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
ncol-method	Handling supplementary information (SI) of spectra
ncol-method	Methods to create objects of class Speclib
noiseFiltering	Smooth spectra
nri	Normalised ratio index
Nri-class	* Nri class
nri_best_performance	Best performing model(s) with NRI
nrow-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
nrow-method	Handling supplementary information (SI) of spectra
nrow-method	Methods to create objects of class Speclib
nspectra	Dimensions of Speclib
n_features	Function to isolate absorption features
n_features-method	Function to isolate absorption features

-- P --

plot-method	Methods to create, manipulate and query objects of class 'Clman'.
plot-method	Plot function for (g)lm.nri and cor.test.nri
plot-method	Plot Specfeat
plot-method	Plot speclib
plot.Nri	Plot function for (g)lm.nri and cor.test.nri
plot.Specfeat	Plot Specfeat
plot.Speclib	Plot speclib
plotRGB-method	Rasterbased methods for spectra
postprocessASD	Read ASD binary file
predictHyperspec	Prediction based on train-object and Speclib
predictHyperspec-method	Prediction based on train-object and Speclib
preProcess-class	Methods for Function 'preProcess'
preProcess-method	Methods for Function 'preProcess'
preProcess-methods	Methods for Function 'preProcess'
print-method	Methods for * Nri-class
print-method	Methods to create objects of class Speclib
print-method	Handling spectra
print.getNRI	Return nri-values
PROSAIL	Simulate canopy spectrum
PROSPECT	Simulate plant spectrum
PROSPECTinvert	Simulate plant spectrum

-- Q --

Quickbird_response

Spectral resampling

-- R --

RapidEye_response	Spectral resampling
Raster-methods	Rasterbased methods for spectra
rastermeta	Create list containing rastermeta-information
read.ASD	Read ASD binary file
readAll-method	Handling spectra
read_header	Get reflectance values
rededge	Red edge parameter
response_functions	Spectral resampling
rfe-method	Methods for Function 'rfe'
rfe-methods	Methods for Function 'rfe'
rowFromY-method	Handling spectra

-- S --

safs-method	Methods for Function 'safs'
safs-methods	Methods for Function 'safs'
sam	Distance between spectra
sam_distance	Distance between spectra
sbf-method	Methods for Function 'sbf'
sbf-methods	Methods for Function 'sbf'
Sentinel2A_response	Spectral resampling
Sentinel2B_response	Spectral resampling
setPredictor	Set predictor variable(s)
setPredictor-method	Set predictor variable(s)
setPredictor-methods	Set predictor variable(s)
setResponse	Set response variable
setResponse-method	Set response variable
setResponse-methods	Set response variable
show-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
show-method	HyperSpecRaster* class (deprecated)
show-method	Methods for Function 'preProcess'
show-method	Methods for * Nri-class
show-method	Methods to create objects of class Speclib
show-method	Handling spectra
showCaretParameters	Show caret related parameters
showCaretParameters-method	Show caret related parameters
SI	Handling supplementary information (SI) of spectra
SI-method	Handling supplementary information (SI) of spectra
SI.speclib	Handling supplementary information (SI) of spectra
SI<-	Handling supplementary information (SI) of spectra
SI<--method	Handling supplementary information (SI) of spectra
smgm	SMGM
smoothSpeclib	Smooth spectra
soilindex	soilindex
specfeat	Function to isolate absorption features
Specfeat-class	* Specfeat class
speclib	Methods to create objects of class Speclib
Speclib-class	* Speclib class
speclib-method	Methods to create objects of class Speclib
spectra	Handling spectra
spectra-method	Methods to create, manipulate and query objects of class 'Clman'.
spectra-method	Handling spectra
spectra.Speclib	Handling spectra
spectra<-	Handling spectra
spectra<--method	Methods to create, manipulate and query objects of class 'Clman'.
spectra<--method	Handling spectra
spectral.resampling	Spectral resampling
spectralInterpolation	Interpolate spectra
spectralResampling	Spectral resampling
spectral_data	Hyperspectral samples
sr	Simple ratio index
subset-method	Subsetting 'Nri'-objects
subset-method	Subsetting speclibs
subset.nri	Subsetting 'Nri'-objects
subset.speclib	Subsetting speclibs

-- T --

t.test-method	t-test for nri values
t.test.nri	t-test for nri values
train-method	Methods for Function 'train'
train-methods	Methods for Function 'train'
transformSpeclib	Transform spectra

-- U --

unmix	Unmix spectra
updatecl	Check transformed Speclib
usagehistory	History of usage
usagehistory<-	History of usage
USGS_get_available_files	import USGS spectra
USGS_retrieve_files	import USGS spectra

-- V --

vegindex

-- W --

wavelength	Handling wavelength and fwhm
wavelength-method	Methods for * Nri-class
wavelength-method	Handling wavelength and fwhm
wavelength<-	Handling wavelength and fwhm
wavelength<--method	Handling wavelength and fwhm
writeRaster-method	Rasterbased methods for spectra
writeStart-method	Handle hyperspectral cubes using raster package (deprecated)
writeStart-method	Functions for processing large hyperspectral raster files
writeStop-method	Functions for processing large hyperspectral raster files
writeValues-method	Handle hyperspectral cubes using raster package (deprecated)
writeValues-method	Functions for processing large hyperspectral raster files
WV_2_8_response	Spectral resampling

-- misc --

$-method	Methods for * Nri-class
$-method	Methods to create objects of class Speclib
<-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
<=-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
==-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
>-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
>=-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
[-method	Methods to create, manipulate and query objects of class 'DistMat3D'.
[-method	Handling supplementary information (SI) of spectra
[-method	Methods for * Nri-class
[-method	Function to isolate absorption features
[-method	Indexing Speclib
[-method	Handling spectra
[<--method	Methods to create, manipulate and query objects of class 'DistMat3D'.