Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI &
Random Effects
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Documentation for package ‘metamicrobiomeR’ version 1.2
Help Pages
| alpha.compare | Compare multiple alpha diversity indexes between groups |
| alphadat | Alpha diversity data. |
| asum4 | Combined alpha diversity data for meta-analysis. |
| covar.rm | Covariate data. |
| gtab.3stud | Test datasets for microbiome age prediction. |
| kegg.12 | Pathway abundance data. |
| meta.niceplot | Nice meta-analysis plots. |
| meta.taxa | Meta-analysis of taxa/pathway abundance comparison. |
| metatab.show | Display meta-analysis results. |
| microbiomeage | Predict microbiome age. |
| pathway.compare | Compare (kegg) pathway abundance |
| read.multi | Read multiple files |
| tabsex4 | Combined data for meta-analysis. |
| taxa.compare | Compare taxa relative abundance |
| taxa.filter | Filter relative abundance data |
| taxa.mean.plot | Plot mean taxa abundance |
| taxa.meansdn | Summarize abundance by group |
| taxcomtab.show | Display abundance comparison results. |
| taxtab6 | Taxonomic relative abundance data. |