Regularization Paths for SCAD and MCP Penalized Regression Models

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Documentation for package ‘ncvreg’ version 3.13.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ncvreg-package	Regularization paths for SCAD- and MCP-penalized regression models
AUC	Calculates AUC for cv.ncvsurv objects
AUC.cv.ncvsurv	Calculates AUC for cv.ncvsurv objects
coef.ncvreg	Model predictions based on a fitted ncvreg object.
coef.ncvsurv	Model predictions based on a fitted "ncvsurv" object.
cv.ncvreg	Cross-validation for ncvreg/ncvsurv
cv.ncvsurv	Cross-validation for ncvreg/ncvsurv
fir	Marginal false discovery rates
Heart	Risk factors associated with heart disease
heart	Risk factors associated with heart disease
local_mfdr	Estimate local mFDR for all features
Lung	VA lung cancer data set
mfdr	Marginal false discovery rates
ncvfit	Direct interface for nonconvex penalized regression (non-pathwise)
ncvreg	Fit an MCP- or SCAD-penalized regression path
ncvsurv	Fit an MCP- or SCAD-penalized survival model
perm.ncvreg	Permutation fitting for ncvreg
permres	Permute residuals for a fitted ncvreg model
permres.ncvreg	Permute residuals for a fitted ncvreg model
plot.cv.ncvreg	Plots the cross-validation curve from a cv.ncvreg object
plot.mfdr	Plot marginal false discovery rate curves
plot.ncvreg	Plot coefficients from a ncvreg object
plot.ncvsurv.func	Plot survival curve for ncvsurv model
predict.ncvreg	Model predictions based on a fitted ncvreg object.
predict.ncvsurv	Model predictions based on a fitted "ncvsurv" object.
print.summary.cv.ncvreg	Summarizing cross-validation-based inference
print.summary.ncvreg	Summary method for ncvreg objects
Prostate	Factors associated with prostate specific antigen
prostate	Factors associated with prostate specific antigen
std	Standardizes a design matrix
summary.cv.ncvreg	Summarizing cross-validation-based inference
summary.ncvreg	Summary method for ncvreg objects
summary.ncvsurv	Summary method for ncvreg objects