Testing Neighbor Effects in Marker-Based Regressions

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Documentation for package ‘rNeighborGWAS’ version 1.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calc_PVEnei	Calculating phenotypic variation explained by neighbor effects
delta_PVE	Estimating the effective scale of neighbor effects
gaston2neiGWAS	Convert gaston's bed.matrix data to rNeighborGWAS genotype data.
min_dist	Calculating the minimum distance
neiGWAS	Genome-wide association mapping of neighbor effects
nei_coval	Calculating neighbor genotypic identity
nei_lm	Standard linear models for testing self and neighbor effects
nei_lmm	Mixed models for testing self and neighbor effects
nei_simu	Simulating phenotypes with self and neighbor effects
qtl_pheno_simu	Simulating phenotype values with neighbor effects.
w	Calculating a distance decay weight