Explainable Machine Learning in Survival Analysis

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Documentation for package ‘survex’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

brier_score	Calculate Brier score
cd_auc	Calculate Cumulative/Dynamic AUC
cumulative_hazard_to_survival	Transform Cumulative Hazard to Survival
c_index	Compute the Harrell's Concordance index
explain	A model-agnostic explainer for survival models
explain.default	A model-agnostic explainer for survival models
explain_survival	A model-agnostic explainer for survival models
integrated_brier_score	Calculate integrated Brier score
integrated_cd_auc	Calculate integrated C/D AUC
loss_adapt_mlr3proba	Adapt mlr3proba measures for use with survex
loss_brier_score	Calculate Brier score
loss_integrate	Calculate integrated metrics based on time-dependent metrics.
loss_integrated_brier_score	Calculate integrated Brier score
loss_one_minus_cd_auc	Calculate Cumulative/Dynamic AUC loss
loss_one_minus_c_index	Calculate the Concordance index loss
loss_one_minus_integrated_cd_auc	Calculate integrated C/D AUC loss
model_parts	Dataset Level Variable Importance for Survival Models
model_parts.surv_explainer	Dataset Level Variable Importance for Survival Models
model_performance	Dataset Level Performance Measures
model_performance.surv_explainer	Dataset Level Performance Measures
model_profile	Dataset Level Variable Profile as Partial Dependence Explanations for Survival Models
model_profile.surv_explainer	Dataset Level Variable Profile as Partial Dependence Explanations for Survival Models
plot.feature_importance_explainer	Plots Feature Importance
plot.model_parts_survival	Plot Model Parts for Survival Models
plot.model_performance_survival	Plot Model Performance for Survival Models
plot.model_profile_survival	Plot Model Profile for Survival Models
plot.predict_parts_survival	Plot Predict Parts for Survival Models
plot.predict_profile_survival	Plot Predict Profile for Survival Models
plot.surv_ceteris_paribus	Plot Predict Profile for Survival Models
plot.surv_feature_importance	Plot Permuatational Feature Importance for Survival Models
plot.surv_lime	Plot SurvLIME Explanations for Survival Models
plot.surv_model_performance	Plot Model Performance Metrics for Survival Models
plot.surv_model_performance_rocs	Plot ROC Curves for Survival Models
plot.surv_shap	Plot SurvSHAP(t) Explanations for Survival Models
predict.surv_explainer	Model Predictions for Survival Models
predict_parts	Instance Level Parts of Survival Model Predictions
predict_parts.surv_explainer	Instance Level Parts of Survival Model Predictions
predict_profile	Instance Level Profile as Ceteris Paribus for Survival Models
predict_profile.surv_explainer	Instance Level Profile as Ceteris Paribus for Survival Models
risk_from_chf	Generate Risk Prediction based on the Survival Function
survival_to_cumulative_hazard	Transform Survival to Cumulative Hazard
surv_model_info	Extract additional information from the model
surv_model_info.coxph	Extract additional information from the model
surv_model_info.cph	Extract additional information from the model
surv_model_info.default	Extract additional information from the model
surv_model_info.LearnerSurv	Extract additional information from the model
surv_model_info.model_fit	Extract additional information from the model
surv_model_info.ranger	Extract additional information from the model
surv_model_info.rfsrc	Extract additional information from the model
transform_to_stepfunction	Transform Fixed Point Prediction into a Stepfunction