Exploring Biological Relevance of Environmental Chemistry Observations

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Documentation for package ‘toxEval’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

toxEval-package	Analyze ToxCast data in relation to measured concentrations.
as.toxEval	toxEval helper functions
clean_endPoint_info	clean_endPoint_info
create_toxEval	Load and check toxEval data
endpoint_hits	Rank endpoints by category
endpoint_hits_DT	Rank endpoints by category
end_point_info	Endpoint information from ToxCast
explore_endpoints	Explore data in the Shiny Application
filter_groups	Filter endPoints based on groups and assays.
get_ACC	Get the ACC values for a selection of chemicals
get_chemical_summary	Compute EAR values
get_concentration_summary	Create concentration summary
graph_chem_data	Prepare boxplot data
hits_by_groupings	Biological hits per category
hits_by_groupings_DT	Biological hits per category
hits_summary	Summary of hits per site/category
hits_summary_DT	Summary of hits per site/category
make_tox_map	Create an interactive map of the data
map_tox_data	Create an interactive map of the data
plot_chemical_boxplots	Grouped Boxplots
plot_tox_boxplots	Grouped Boxplots
plot_tox_endpoints	EndPoint boxplots
plot_tox_heatmap	Plot EAR heat maps
plot_tox_stacks	Plot stacked bar charts
rank_sites	Rank sites by EAR
rank_sites_DT	Rank sites by EAR
remove_flags	Remove endpoints with specific data quality flags from data
side_by_side_data	Prepare boxplot data
summary.toxEval	Summary of tox_list
ToxCast_ACC	ACC values included with toxEval.
tox_boxplot_data	Prepare boxplot data
tox_chemicals	ToxCast Chemical Information