collapse_snps_into_genes |
Collapse SNPs into the gene(s) which they are from |
collapse_snps_into_genes_by_impact |
Collapse SNPs into the gene(s) which they are from and by snpeff impcat |
gff |
GFF3 file for example genomes |
outgroup |
Name of outgroup in the phylogenetic tree. |
prewas |
Preprocess SNPs before bGWAS |
results |
Results from running prewas() on the example data. |
snpeff_vcf |
Nucleotide variants in example genome samples with snpeff annotations. |
tree |
Phylogenetic tree of example genomes |
vcf |
Nucleotide variants in example genome samples |