Computation and Visualization of Adaptive Landscapes


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Documentation for package ‘Morphoscape’ version 1.0.0

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as_fnc_df Convert a data frame to a 'fnc_df'
calcGrpWprime Compute optimally weighted adaptive landscapes
calcWprimeBy Compute optimally weighted adaptive landscapes by subgroup
calc_all_lscps Calculate adaptive landscapes for a matrix of weights
calc_lscp Calculate a single weighted adaptive landscape
calc_lscp.all_lscps Calculate a single weighted adaptive landscape
calc_lscp.kriged_surfaces Calculate a single weighted adaptive landscape
fnc_df Convert a data frame to a 'fnc_df'
generate_weights Generate a matrix containing weight combinations
kriged_surfaces Interpolate functional characteristics over a grid
krige_new_data Interpolate functional characteristics over a grid
krige_surf Interpolate functional characteristics over a grid
lands.grp.test Significance tests between sets of weights
multi.lands.grp.test Significance tests between sets of weights
plot.by_Wprime Plot Adaptive Landscapes
plot.grp_Wprime Plot Adaptive Landscapes
plot.kriged_surfaces Plots Kriged surfaces of functional characteristics
plot.wtd_lscp Plot Adaptive Landscapes
print.by_Wprime Compute optimally weighted adaptive landscapes by subgroup
print.grp_Wprime Compute optimally weighted adaptive landscapes
print.lands.grp.test Significance tests between sets of weights
print.multi.lands.grp.test Significance tests between sets of weights
print.summary.by_Wprime Compute optimally weighted adaptive landscapes by subgroup
resample_grid Create a full grid from a set of coordinates
summary.by_Wprime Compute optimally weighted adaptive landscapes by subgroup
turtles Turtle Humeri
warps Simulated Shape Warps
wtd_lscp Calculate a single weighted adaptive landscape