# Preparation, Checking and Post-Processing Data for PK/PD Modeling

## Documentation for package ‘NMdata’ version 0.0.15

- DESCRIPTION file.

## Help Pages

addTAPD | Add time since previous dose to data, time of previous dose, most recent dose amount, cumulative number of doses, and cumulative dose amount.
cbind.NMdata | Basic arithmetic on NMdata objects
cc | Create character vectors without quotation marks
cl | Define a vector with factor levels in the same order as occurring in the vector.
compareCols | Compare elements in lists with aim of combining
dimnames.NMdata | Basic arithmetic on NMdata objects
dims | Get dimensions of multiple objects
egdt | Expand grid of data.tables
findCovs | Extract columns that vary within values of other columns
findVars | Extract columns that vary within values of other columns in a data.frame
flagsAssign | Assign exclusion flags to a dataset based on specified table
flagsCount | Create an overview of number of retained and discarded datapoints.
fnAppend | paste something before file name extension.
fnExtension | Change file name extension
is.NMdata | Check if an object is 'NMdata'
listMissings | List rows with missing values across multiple columns
merge.NMdata | Basic arithmetic on NMdata objects
mergeCheck | Merge, order, and check resulting rows and columns.
NMcheckColnames | Compare $INPUT in control stream to column names in input data
NMcheckData | Check data for Nonmem compatibility or check control stream for data compatibility
NMdataConf | Configure default behavior of NMdata functions
NMdataOperations | Basic arithmetic on NMdata objects
NMexpandDoses | Transform repeated dosing events (ADDL/II) to individual dosing events
NMextractDataFile | Extract the data file used in a control stream
NMextractText | Versatile text extractor from Nonmem (input or output) control streams
NMgenText | Generate text for INPUT and possibly DATA sections of NONMEM control streams.
NMgetSection | Extract sections of Nonmem control streams
NMinfo | Get metadata from an NMdata object
NMisNumeric | Test if a variable can be interpreted by Nonmem
NMorderColumns | Standardize column order in Nonmem input data
NMreadCsv | Read input data formatted for Nonmem
NMreadSection | Extract sections of Nonmem control streams
NMreadTab | Read an output table file from Nonmem
NMscanData | Automatically find Nonmem input and output tables and organize data
NMscanInput | Find and read input data and optionally translate column names according to the $INPUT section
NMscanMultiple | Run NMscanData on multiple models and stack results
NMscanTables | Find and read all output data tables in Nonmem run
NMstamp | stamp a dataset or any other object
NMwriteData | Write dataset for use in Nonmem (and R)
NMwriteSection | Replace ($)sections of a Nonmem control stream
print.summary_NMdata | print method for NMdata summaries
rbind.NMdata | Basic arithmetic on NMdata objects
renameByContents | Rename columns matching properties of data contents
summary.NMdata | summary method for NMdata objects
t.NMdata | Basic arithmetic on NMdata objects
unNMdata | Remove NMdata class and discard NMdata meta data