Mass Spectrometry Metabolomics Feature Clustering and Interpretation


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Documentation for package ‘RAMClustR’ version 1.2.4

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annotate evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object
annotation.summary annotation.summary()
assign.z assign.z
change.annotation evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object
cmpd.summary cmpd.summary
defineExperiment defineExperiment
do.findmain do.findmain
export.msfinder.formulas export MSFinder formula prediction results in tabular format.
exportDataset exportDataset
findfeature findfeature
findmass findmass
fooddb2msfinder foodb2msfinder
getData getData
getSmilesInchi getSmilesInchi
import.adap.kdb import.adap.kdb
import.msfinder.formulas import.msfinder.formulas
import.msfinder.mssearch import.MSFinder.mssearch
import.msfinder.structures write.methods
import.sirius import.sirius
impRamSearch impRamSearch
manual.annotation.template manual.annotation.template
mergeRCobjects mergeRCobjects
ramclustR ramclustR
rc.calibrate.ri rc.cmpd.filter.cv
rc.cmpd.filter.cv rc.cmpd.filter.cv
rc.cmpd.get.classyfire getClassyFire
rc.cmpd.get.pubchem rc.cmpd.get.pubchem
rc.cmpd.get.smiles.inchi getSmilesInchi
rc.cmpd.replace.na rc.cmpd.replace.na
rc.expand.sample.names rc.expand.sample.names
rc.export.msp.rc rc.export.msp.rc
rc.feature.filter.blanks rc.feature.filter.blanks
rc.feature.filter.cv rc.feature.filter.cv
rc.feature.normalize.qc rc.feature.normalize.qc
rc.feature.normalize.tic rc.feature.normalize.tic
rc.feature.replace.na rc.feature.replace.na
rc.get.xcms.data rc.get.xcms.data
rc.qc rc.qc
rc.ramclustr rc.ramclustr
rc.remove.qc rc.remove.qc
rc.restore.qc.samples rc.restore.qc.samples
RCQC RCQC
write.methods write.methods
write.msp write.msp