Forensic Bayesian Networks
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Documentation for package ‘fbnet’ version 1.0.1
Help Pages
| addMarkerfb | Marker functions |
| addOffspring | Modify the pedigree of 'linkdat' objects |
| allGenotypes | Genotype combinations |
| ancestorsfb | Pedigree subsets |
| Argentina_STRs | STRs allelic frequencies from Argentina. |
| as.matrix.linkdat | linkdat to matrix conversion |
| breakLoopsfb | Pedigree loops |
| buildBN | buildBN: a function for building the bayesian network. |
| buildCPTs | buildCPTs: a function for building conditional probability tables based on pedigree bayesian network. |
| connectedComponentsfb | Convert 'Familias' output to linkdat objects |
| convertPedformat | convertPedformat: a function for converting a pedtools ped onject to a famlink ped object. |
| cousins | Pedigree subsets |
| descendantsfb | Pedigree subsets |
| evidencePrunning | evidencePrunning: a fuction for pruning instantiated variables. |
| factorHeteroFounders | factorHeteroFounders: a function for multiplying probabilities in case of heterocigote founders. |
| Familias2linkdat | Convert 'Familias' output to linkdat objects |
| FamiliasLocus | FamiliasLocus: a function for reading Familias locus data. |
| FamiliasPedigree | FamiliasPedigree: a function for constructing Familias pedigree format. |
| fast.grid | Genotype combinations |
| fbnet | fbnet: Forensic Bayesian Networks |
| findLoopBreakersfb | Pedigree loops |
| findLoopBreakersfb2 | Pedigree loops |
| geno.grid.subset | Genotype combinations |
| getConditional | getConditional: a function for obtaining the coditional probability tables based on a given evidence. |
| getGenotypeTables | getGenotypeTables: a function for obtaining genotypetables after variable elimination and using available genetic evidence. |
| getLocusCPT | getLocusCPT: a function for obtaining the coditional probability table from a specific locus. |
| getMAP | factorHeteroFounders: a function for multiplying probabilities in case of heterocigote founders. |
| getMarkersfb | Marker functions |
| getQSetRMP | getGenotypeTables: a function for obtaining genotypetables after variable elimination and using available genetic evidence. |
| getValuesOut | getValuesOut: a function for getting out variables with zero probability in the bayesian network |
| grandparentsfbfb | Pedigree subsets |
| imposeEvidence | imposeEvidence: a fuction for imposing evidence in the bayesian network. |
| initBN | initBN: a function to initialize the bayesian network. |
| initBN.fromPed | initBN.fromPed: a function to initialize the bayesian network. |
| initBN.fromVars | initBN.fromVars: a function to initialize the bayesian network. |
| is.linkdat | Is an object a linkdat object? |
| is.linkdat.list | Is an object a linkdat object? |
| is.singletonfbfb | Is an object a linkdat object? |
| leavesfb | Pedigree subsets |
| likelihood.linkdat | Pedigree likelihood |
| likelihood.singleton | Pedigree likelihood |
| linkdat | Linkdat objects |
| markerfb | Marker functions |
| markers | Marker functions |
| markerSimfb | Marker simulation |
| mendelianCheckfb | Check for Mendelian errors |
| minOrdering | minOrdering: a function for getting an ordering of bayesian network variables not in Q using min fill criteria on interaction graphs. |
| modifyMarkerfb | Marker functions |
| modifyMarkerfbMatrix | Marker functions |
| nephews_niecesfb | Pedigree subsets |
| offspringfb | Pedigree subsets |
| parentsfb | Pedigree subsets |
| pedigreeLoops | Pedigree loops |
| pedModify | Modify the pedigree of 'linkdat' objects |
| pedParts | Pedigree subsets |
| preparePed | preparePed: a function for simulating genetic data from untyped individuals conditioned on known genotypes. |
| print.linkdat | Linkdat objects |
| print.linkdat.model | Set, change or display the model parameters for 'linkdat' objects |
| prodFactor | prodFactor: a function for performing product between probability tables. |
| pruneNodes | pruneNodes: a fuction for clasical pruning in bayesian networks. |
| readFamiliasLoci | Convert 'Familias' output to linkdat objects |
| relabelfb | Modify the pedigree of 'linkdat' objects |
| related.pairs | Pedigree subsets |
| removeEvidenceFromPed | removeEvidenceFromPed: a function for removing evidence from specific individuals in a ped object. |
| removeIndividualsfb | Modify the pedigree of 'linkdat' objects |
| removeMarkersfb | Marker functions |
| reportLR | reportLR: a function for calculating the LRs of specified genotypes in a pedigree. |
| reportPQ | reportPQ: a function for calculating the probability of specified genotypes in a pedigree. |
| restore_linkdat | linkdat to matrix conversion |
| reverseSplit | reverseSpit: a function for formatting. |
| setAvailable | Functions for modifying availability vectors |
| SetMarkersfb | Marker functions |
| setModel | Set, change or display the model parameters for 'linkdat' objects |
| setOrdering | setOrdering: a function for selecting the ordering method in the elimination process. |
| siblingsfb | Pedigree subsets |
| simpleSimfb | Unconditional marker simulation |
| singletonfb | Linkdat objects |
| spousesfb | Pedigree subsets |
| stateRemoval | stateRemoval: a function for processing the bayesian network. |
| stateRemoval2 | stateRemoval2: a function for processing the bayesian network. It implements another approach from the described in stateRemoval function. |
| stateRemovalSubnucs | stateRemovalSubnucs: a fuctiong for variable state pruning. |
| subset.linkdat | Linkdat objects |
| sumFactor | prodFactor: a function for performing sum between probability tables. |
| summary.linkdat | Linkdat objects |
| swapAvailable | Functions for modifying availability vectors |
| swapGenotypesfb | Marker functions |
| tieLoopsfb | Pedigree loops |
| toybase | Toy allele frequency database. |
| toyped | STRs allelic frequencies from specified country. |
| trim | Modify the pedigree of 'linkdat' objects |
| unrelatedfb | Pedigree subsets |
| velim.bn | velim.bn: a function for variable elimination in a bayesian network. |