Last updated on 2023-01-25 04:51:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 14.72 | 299.80 | 314.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 9.01 | 216.90 | 225.91 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 380.93 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 362.02 | NOTE | |||
| r-devel-windows-x86_64 | 1.1.2 | 51.00 | 355.00 | 406.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 11.07 | 267.11 | 278.18 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 12.11 | 270.73 | 282.84 | OK | |
| r-release-macos-arm64 | 1.1.2 | 95.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.2 | 133.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.2 | 89.00 | 346.00 | 435.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | 94.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.2 | 145.00 | ERROR | |||
| r-oldrel-windows-ix86+x86_64 | 1.1.2 | 21.00 | 350.00 | 371.00 | ERROR |
Version: 1.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘AUCell’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: Rd cross-references
Result: NOTE
Undeclared package ‘SeuratObject’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'Nebulosa', 'infercnv', 'UCell', 'AUCell'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.2
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘infercnv’, ‘UCell’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [50s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
• On CRAN (417)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests ──
Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
Backtrace:
▆
1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
2. └─SCpubr:::do_EnrichedTermTreePlot(...)
3. ├─p.build$data[[7]][c("label", "node")]
4. └─base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
[ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/76s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
• On CRAN (417)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests ──
Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
Backtrace:
▆
1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
2. └─SCpubr:::do_EnrichedTermTreePlot(...)
3. ├─p.build$data[[7]][c("label", "node")]
4. └─base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
[ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘infercnv’
Unknown package ‘UCell’ in Rd xrefs
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [47s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
color = color2)`: arguments imply differing number of rows: 5, 0
Backtrace:
▆
1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
2. └─SCpubr:::do_EnrichedTermTreePlot(...)
3. ├─enrichplot::treeplot(...)
4. └─enrichplot::treeplot(...)
5. └─enrichplot:::treeplot.enrichResult(...)
6. └─enrichplot:::group_tree(...)
7. └─enrichplot:::add_cladelab(...)
8. └─base::data.frame(...)
[ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/75s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
color = color2)`: arguments imply differing number of rows: 5, 0
Backtrace:
▆
1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
2. └─SCpubr:::do_EnrichedTermTreePlot(...)
3. ├─enrichplot::treeplot(...)
4. └─enrichplot::treeplot(...)
5. └─enrichplot:::treeplot.enrichResult(...)
6. └─enrichplot:::group_tree(...)
7. └─enrichplot:::add_cladelab(...)
8. └─base::data.frame(...)
[ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'UCell'
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.1.2
Check: dependencies in R code
Result: WARN
Missing or unexported object: 'AUCell::AUCell_run'
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.1.2
Check: Rd cross-references
Result: NOTE
Unknown package 'UCell' in Rd xrefs
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(SCpubr)
---------------------------------------------------------------
SCpubr
If you use SCpubr in your research, please cite it accordingly:
Blanco-Carmona, E. Generating publication ready visualizations for Single Cell transcriptomics using SCpubr. bioRxiv (2022) doi:10.1101/2022.02.28.482303.
If the package is useful to you, consider leaving a Star in the GitHub repo: https://github.com/enblacar/SCpubr/stargazers
Keep track of the package updates on Twitter (@Enblacar) or in https://github.com/enblacar/SCpubr/blob/main/NEWS.md
To suppress this startup message, use:
suppressPackageStartupMessages(library('SCpubr'))
---------------------------------------------------------------
> test_check("SCpubr")
[ FAIL 1 | WARN 0 | SKIP 440 | PASS 90 ]
== Skipped tests ===============================================================
* On CRAN (440)
== Failed tests ================================================================
-- Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests --
Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
Backtrace:
x
1. \-SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
2. \-SCpubr:::do_EnrichedTermTreePlot(...)
3. +-p.build$data[[7]][c("label", "node")]
4. \-base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
[ FAIL 1 | WARN 0 | SKIP 440 | PASS 90 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64