Last updated on 2023-01-25 04:51:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 9.38 | 83.60 | 92.98 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 5.38 | 61.85 | 67.23 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 112.53 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 124.25 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.3 | 26.00 | 886.00 | 912.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 10.10 | 214.65 | 224.75 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 5.19 | 220.96 | 226.15 | OK | |
| r-release-macos-arm64 | 2.0.3 | 267.00 | OK | |||
| r-release-macos-x86_64 | 2.0.3 | 469.00 | OK | |||
| r-release-windows-x86_64 | 2.0.3 | 43.00 | 702.00 | 745.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 257.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.3 | 457.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.0.3 | 17.00 | 670.00 | 687.00 | OK |
Version: 2.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TDA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘TDApplied-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bootstrap_persistence_thresholds
> ### Title: Estimate persistence threshold(s) for topological features in a
> ### data set using bootstrapping.
> ### Aliases: bootstrap_persistence_thresholds
>
> ### ** Examples
>
>
> # create a persistence diagram from a sample of the unit circle
> df = TDA::circleUnif(n = 50)
Error in loadNamespace(x) : there is no package called ‘TDA’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(TDApplied)
>
> test_check("TDApplied")
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (8)
• T is TRUE (5)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-MDS.R:51'): diagram_mds can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-MDS.R:51:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-bootstrap.R:54'): bootstrap_persistence_thresholds can detect incorrect parameters correctly ──
Error in `bootstrap_persistence_thresholds(data.frame(x = 1:10, y = 1:10),
FUN = "ripsDiag", maxdim = 1, thresh = 2, calculate_representatives = c(T,
F))`: To use the 'ripsDiag' function the package TDA must be installed.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-bootstrap.R:54:2
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─TDApplied::bootstrap_persistence_thresholds(...)
── Error ('test-convert.R:4'): diagram_to_df can accept the right kinds of input ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-convert.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-distance.R:16'): diagram_distance can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-distance.R:16:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:4'): permutation_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:24'): permutation_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:24:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:55'): independence_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. ├─base::lapply(...) at test-inference.R:55:2
2. │ └─TDApplied (local) FUN(X[[i]], ...)
3. └─base::loadNamespace(x) at test-inference.R:55:41
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:71'): independence_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:71:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-kernel.R:15'): diagram_kernel can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-kernel.R:15:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-pca.R:33'): diagram_kpca can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-pca.R:33:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ML_and_Inference.Rmd’ using rmarkdown
Quitting from lines 107-144 (ML_and_Inference.Rmd)
Error: processing vignette ‘ML_and_Inference.Rmd’ failed with diagnostics:
there is no package called 'TDA'
--- failed re-building ‘ML_and_Inference.Rmd’
SUMMARY: processing the following file failed:
‘ML_and_Inference.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(TDApplied)
>
> test_check("TDApplied")
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (8)
• T is TRUE (5)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-MDS.R:51'): diagram_mds can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-MDS.R:51:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-bootstrap.R:54'): bootstrap_persistence_thresholds can detect incorrect parameters correctly ──
Error in `bootstrap_persistence_thresholds(data.frame(x = 1:10, y = 1:10),
FUN = "ripsDiag", maxdim = 1, thresh = 2, calculate_representatives = c(T,
F))`: To use the 'ripsDiag' function the package TDA must be installed.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-bootstrap.R:54:2
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─TDApplied::bootstrap_persistence_thresholds(...)
── Error ('test-convert.R:4'): diagram_to_df can accept the right kinds of input ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-convert.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-distance.R:16'): diagram_distance can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-distance.R:16:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:4'): permutation_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:24'): permutation_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:24:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:55'): independence_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. ├─base::lapply(...) at test-inference.R:55:2
2. │ └─TDApplied (local) FUN(X[[i]], ...)
3. └─base::loadNamespace(x) at test-inference.R:55:41
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:71'): independence_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:71:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-kernel.R:15'): diagram_kernel can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-kernel.R:15:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-pca.R:33'): diagram_kpca can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-pca.R:33:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.3
Check: examples
Result: ERROR
Running examples in ‘TDApplied-Ex.R’ failed
The error most likely occurred in:
> ### Name: bootstrap_persistence_thresholds
> ### Title: Estimate persistence threshold(s) for topological features in a
> ### data set using bootstrapping.
> ### Aliases: bootstrap_persistence_thresholds
>
> ### ** Examples
>
>
> # create a persistence diagram from a sample of the unit circle
> df = TDA::circleUnif(n = 50)
Error in loadNamespace(x) : there is no package called ‘TDA’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/96s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(TDApplied)
>
> test_check("TDApplied")
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (8)
• T is TRUE (5)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-MDS.R:51'): diagram_mds can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-MDS.R:51:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-bootstrap.R:54'): bootstrap_persistence_thresholds can detect incorrect parameters correctly ──
Error in `bootstrap_persistence_thresholds(data.frame(x = 1:10, y = 1:10),
FUN = "ripsDiag", maxdim = 1, thresh = 2, calculate_representatives = c(T,
F))`: To use the 'ripsDiag' function the package TDA must be installed.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-bootstrap.R:54:2
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─TDApplied::bootstrap_persistence_thresholds(...)
── Error ('test-convert.R:4'): diagram_to_df can accept the right kinds of input ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-convert.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-distance.R:16'): diagram_distance can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-distance.R:16:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:4'): permutation_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:24'): permutation_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:24:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:55'): independence_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. ├─base::lapply(...) at test-inference.R:55:2
2. │ └─TDApplied (local) FUN(X[[i]], ...)
3. └─base::loadNamespace(x) at test-inference.R:55:41
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:71'): independence_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:71:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-kernel.R:15'): diagram_kernel can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-kernel.R:15:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-pca.R:33'): diagram_kpca can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-pca.R:33:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ML_and_Inference.Rmd’ using rmarkdown
Quitting from lines 107-144 (ML_and_Inference.Rmd)
Error: processing vignette 'ML_and_Inference.Rmd' failed with diagnostics:
there is no package called 'TDA'
--- failed re-building ‘ML_and_Inference.Rmd’
SUMMARY: processing the following file failed:
‘ML_and_Inference.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/109s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(TDApplied)
>
> test_check("TDApplied")
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (8)
• T is TRUE (5)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-MDS.R:51'): diagram_mds can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-MDS.R:51:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-bootstrap.R:54'): bootstrap_persistence_thresholds can detect incorrect parameters correctly ──
Error in `bootstrap_persistence_thresholds(data.frame(x = 1:10, y = 1:10),
FUN = "ripsDiag", maxdim = 1, thresh = 2, calculate_representatives = c(T,
F))`: To use the 'ripsDiag' function the package TDA must be installed.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-bootstrap.R:54:2
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─TDApplied::bootstrap_persistence_thresholds(...)
── Error ('test-convert.R:4'): diagram_to_df can accept the right kinds of input ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-convert.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-distance.R:16'): diagram_distance can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-distance.R:16:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:4'): permutation_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:4:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:24'): permutation_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:24:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:55'): independence_test detects incorrect parameters correctly ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. ├─base::lapply(...) at test-inference.R:55:2
2. │ └─TDApplied (local) FUN(X[[i]], ...)
3. └─base::loadNamespace(x) at test-inference.R:55:41
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-inference.R:71'): independence_test can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-inference.R:71:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-kernel.R:15'): diagram_kernel can accept inputs from either TDA/TDAstats homology output or diagram_to_df function, with or without cycle location ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-kernel.R:15:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-pca.R:33'): diagram_kpca can accept inputs from TDA, TDAstats and diagram_to_df ──
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'TDA'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-pca.R:33:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 10 | WARN 0 | SKIP 13 | PASS 146 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc