CRAN Package Check Results for Package data.table

Last updated on 2023-01-25 04:51:34 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.14.6 41.38 164.01 205.39 OK --no-tests
r-devel-linux-x86_64-debian-gcc 1.14.6 31.18 117.49 148.67 OK --no-tests
r-devel-linux-x86_64-fedora-clang 1.14.6 435.87 ERROR
r-devel-linux-x86_64-fedora-gcc 1.14.6 400.10 ERROR
r-devel-windows-x86_64 1.14.6 264.00 0.00 264.00 FAIL
r-patched-linux-x86_64 1.14.6 39.63 150.68 190.31 OK --no-tests
r-release-linux-x86_64 1.14.6 40.78 136.44 177.22 OK --no-tests
r-release-macos-arm64 1.14.6 131.00 OK
r-release-macos-x86_64 1.14.6 157.00 OK
r-release-windows-x86_64 1.14.6 238.00 0.00 238.00 FAIL
r-oldrel-macos-arm64 1.14.6 137.00 OK
r-oldrel-macos-x86_64 1.14.6 168.00 OK
r-oldrel-windows-ix86+x86_64 1.14.6 118.00 459.00 577.00 OK

Additional issues

clang-ASAN

Check Details

Version: 1.14.6
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [48s/123s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [117s/312s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     OpenMP version (_OPENMP) 201811
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     R_DATATABLE_THROTTLE unset (default 1024)
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads with throttle==1024. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1613.605 ran without errors but failed check that x equals y:
     > x = all.equal(data.table(a = 1), try(stop("this wont work"), silent = TRUE), check.attributes = FALSE)
     First 1 of 1 (type 'character'):
     [1] "Datasets have different column modes. First 3: a(numeric!=character)"
     > y = "target is data.table but current is not and failed to be coerced to it"
     First 1 of 1 (type 'character'):
     [1] "target is data.table but current is not and failed to be coerced to it"
     1 string mismatch
    
     Mon Jan 23 22:51:03 2023 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201811; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', zlibVersion()==1.2.11 ZLIB_VERSION==1.2.11
     Error in test.data.table() :
     1 error out of 9917. Search tests/tests.Rraw.bz2 for test number 1613.605.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.14.6
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [38s/41s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [101s/104s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     OpenMP version (_OPENMP) 201511
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     R_DATATABLE_THROTTLE unset (default 1024)
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads with throttle==1024. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1613.605 ran without errors but failed check that x equals y:
     > x = all.equal(data.table(a = 1), try(stop("this wont work"), silent = TRUE), check.attributes = FALSE)
     First 1 of 1 (type 'character'):
     [1] "Datasets have different column modes. First 3: a(numeric!=character)"
     > y = "target is data.table but current is not and failed to be coerced to it"
     First 1 of 1 (type 'character'):
     [1] "target is data.table but current is not and failed to be coerced to it"
     1 string mismatch
    
     Mon Jan 23 20:29:12 2023 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', zlibVersion()==1.2.11 ZLIB_VERSION==1.2.11
     Error in test.data.table() :
     1 error out of 9917. Search tests/tests.Rraw.bz2 for test number 1613.605.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.14.6
Check: tests
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > ### Name: update_dev_pkg
    > ### Title: Perform update of development version of a package
    > ### Aliases: update_dev_pkg
    > ### Keywords: data
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # using if(FALSE) because \dontrun could still be run by --run-dontrun; #5421
    > ## End(Don't show)
    > if (FALSE) data.table::update_dev_pkg()
    >
    >
    >
    > ### * <FOOTER>
    > ###
    > cleanEx()
    > options(digits = 7L)
    > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
    Time elapsed: 7.86 0.14 9.06 NA NA
    > grDevices::dev.off()
    null device
     1
    > ###
    > ### Local variables: ***
    > ### mode: outline-minor ***
    > ### outline-regexp: "\\(> \\)?### [*]+" ***
    > ### End: ***
    > quit('no')
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64

Version: 1.14.6
Check: tests
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > ### Name: update_dev_pkg
    > ### Title: Perform update of development version of a package
    > ### Aliases: update_dev_pkg
    > ### Keywords: data
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # using if(FALSE) because \dontrun could still be run by --run-dontrun; #5421
    > ## End(Don't show)
    > if (FALSE) data.table::update_dev_pkg()
    >
    >
    >
    > ### * <FOOTER>
    > ###
    > cleanEx()
    > options(digits = 7L)
    > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
    Time elapsed: 7.75 0.19 8.92 NA NA
    > grDevices::dev.off()
    null device
     1
    > ###
    > ### Local variables: ***
    > ### mode: outline-minor ***
    > ### outline-regexp: "\\(> \\)?### [*]+" ***
    > ### End: ***
    > quit('no')
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64