Last updated on 2023-01-25 04:51:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.0 | 17.63 | 333.15 | 350.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.0 | 13.21 | 240.94 | 254.15 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 324.30 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 317.97 | ERROR | |||
| r-devel-windows-x86_64 | 0.5.0 | 83.00 | 362.00 | 445.00 | OK | |
| r-patched-linux-x86_64 | 0.5.0 | 25.77 | 305.01 | 330.78 | OK | |
| r-release-linux-x86_64 | 0.5.0 | 13.28 | 306.24 | 319.52 | OK | |
| r-release-macos-arm64 | 0.5.0 | 122.00 | OK | |||
| r-release-macos-x86_64 | 0.5.0 | 133.00 | OK | |||
| r-release-windows-x86_64 | 0.5.0 | 91.00 | 358.00 | 449.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.0 | 99.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.5.0 | 129.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.5.0 | 34.00 | 343.00 | 377.00 | OK |
Version: 0.5.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘car’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.0
Check: examples
Result: ERROR
Running examples in ‘ggpubr-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggsummarytable
> ### Title: GGPLOT with Summary Stats Table Under the Plot
> ### Aliases: ggsummarytable ggsummarystats print.ggsummarystats
> ### print.ggsummarystats_list
>
> ### ** Examples
>
> # Data preparation
> #::::::::::::::::::::::::::::::::::::::::::::::::
> data("ToothGrowth")
> df <- ToothGrowth
> df$dose <- as.factor(df$dose)
> # Add random QC column
> set.seed(123)
> qc <- rep(c("pass", "fail"), 30)
> df$qc <- as.factor(sample(qc, 60))
> # Inspect the data
> head(df)
len supp dose qc
1 4.2 VC 0.5 pass
2 11.5 VC 0.5 pass
3 7.3 VC 0.5 pass
4 5.8 VC 0.5 fail
5 6.4 VC 0.5 pass
6 10.0 VC 0.5 fail
>
>
> # Basic summary stats
> #::::::::::::::::::::::::::::::::::::::::::::::::
> # Compute summary statistics
> summary.stats <- df %>%
+ group_by(dose) %>%
+ get_summary_stats(type = "common")
> summary.stats
# A tibble: 3 × 11
dose variable n min max median iqr mean sd se ci
<fct> <fct> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 0.5 len 20 4.2 21.5 9.85 5.03 10.6 4.5 1.01 2.11
2 1 len 20 13.6 27.3 19.2 7.12 19.7 4.42 0.987 2.07
3 2 len 20 18.5 33.9 26.0 4.3 26.1 3.77 0.844 1.77
>
> # Visualize summary table
> ggsummarytable(
+ summary.stats, x = "dose", y = c("n", "median", "iqr"),
+ ggtheme = theme_bw()
+ )
Error in `unite()`:
! Can't rename variables in this context.
Backtrace:
▆
1. ├─ggpubr::ggsummarytable(...)
2. │ └─... %>% mutate(y = paste(names(y), collapse = "\n"))
3. ├─dplyr::mutate(., y = paste(names(y), collapse = "\n"))
4. ├─tidyr::unite(., col = "label", !!!syms(y), sep = "\n")
5. └─tidyr:::unite.data.frame(., col = "label", !!!syms(y), sep = "\n")
6. └─tidyselect::eval_select(expr(c(...)), data, allow_rename = FALSE)
7. └─tidyselect:::eval_select_impl(...)
8. ├─tidyselect:::with_subscript_errors(...)
9. │ └─rlang::try_fetch(...)
10. │ └─base::withCallingHandlers(...)
11. └─tidyselect:::vars_select_eval(...)
12. └─tidyselect:::ensure_named(...)
13. └─cli::cli_abort(...)
14. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc