Last updated on 2023-01-25 04:51:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 9.06 | 74.62 | 83.68 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 6.91 | 57.61 | 64.52 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 103.22 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 101.78 | OK | |||
| r-devel-windows-x86_64 | 1.1 | 13.00 | 96.00 | 109.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 9.60 | 72.83 | 82.43 | OK | |
| r-release-linux-x86_64 | 1.1 | 9.16 | 75.17 | 84.33 | OK | |
| r-release-macos-arm64 | 1.1 | 30.00 | OK | |||
| r-release-macos-x86_64 | 1.1 | 44.00 | OK | |||
| r-release-windows-x86_64 | 1.1 | 13.00 | 100.00 | 113.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1 | 38.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1 | 65.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 19.00 | 93.00 | 112.00 | ERROR |
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.99722777 0.53804299 4.44717585 0.01243551
Age -0.005980971 0.01438747 -0.03418041 0.02221847 0.67762450
Nodes -0.074748098 0.03252282 -0.13849282 -0.01100337 0.02154314
treatmentLev 0.039682347 0.28144689 -0.51195355 0.59131825 0.88787461
treatmentLev.5FU 0.929566117 0.36638208 0.21145723 1.64767500 0.01117592
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 45.793521 -0.401888881 6.26264521 -18.53823536 3.1044597
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.330804e+11 2.08485089 14.92870694 1.330804e+11 1.330804e+11
2 185 7.428589e-01 0.01057275 0.02591081 3.569976e-01 3.409622e-01
3 200 9.972278e-01 0.01438747 0.03252282 2.814469e-01 3.663821e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -2.608377e+11 -4.48819663 -22.9976204 -2.608377e+11 -2.608377e+11
2 185 1.180103e+00 -0.02790783 -0.1300278 -5.982792e-01 3.787791e-01
3 200 5.380430e-01 -0.03418041 -0.1384928 -5.119536e-01 2.114572e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.608377e+11 3.68441887 35.52291082 2.608377e+11 2.608377e+11
2 185 4.092110e+00 0.01353733 -0.02845745 8.011514e-01 1.715351e+00
3 200 4.447176e+00 0.02221847 -0.01100337 5.913182e-01 1.647675e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 0.9999999997 0.8471420 0.674848178 1.0000000 1.000000000
2 185 0.0003872892 0.4967570 0.002226079 0.7763057 0.002134058
3 200 0.0124355112 0.6776245 0.021543144 0.8878746 0.011175922
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11125 (sockconn)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.73105990 1.05973201 3.92548683 0.0006506228
Age -0.005980971 0.01145550 -0.02843375 0.01647181 0.6015973985
Nodes -0.074748098 0.02985551 -0.13326490 -0.01623130 0.0122915530
treatmentLev 0.039682347 0.32373597 -0.59484015 0.67420485 0.9024426486
treatmentLev.5FU 0.929566117 0.28118092 0.37845152 1.48068071 0.0009465970
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 3.488625e+05 2.43547659 8.84015823 3.488768e+05 3.488746e+05
2 185 8.429606e-01 0.01149587 0.03787959 2.795628e-01 4.814005e-01
3 200 7.310599e-01 0.01145550 0.02985551 3.237360e-01 2.811809e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -6.846655e+05 -5.17542299 -11.0640649 -6.828762e+05 -6.828503e+05
2 185 9.839039e-01 -0.02971716 -0.1534866 -4.465071e-01 1.035200e-01
3 200 1.059732e+00 -0.02843375 -0.1332649 -5.948402e-01 3.784515e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 6.828754e+05 4.37164523 23.589355337 6.847207e+05 6.847382e+05
2 185 4.288310e+00 0.01534666 -0.004998649 6.493792e-01 1.990610e+00
3 200 3.925487e+00 0.01647181 -0.016231295 6.742048e-01 1.480681e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 0.9979529911 0.8689326 0.47867743 0.9978907 0.997841232
2 185 0.0017647964 0.5319521 0.03644196 0.7167258 0.029627176
3 200 0.0006506228 0.6015974 0.01229155 0.9024426 0.000946597
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11749 (sockconn)
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
Warning in model.matrix.default(mt, mf, contrasts) :
non-list contrasts argument ignored
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.625484714 1.26665938 3.71855946 6.745613e-05
Age -0.005980971 0.009930377 -0.02544451 0.01348257 5.469809e-01
Nodes -0.074748098 0.026010429 -0.12572854 -0.02376766 4.055989e-03
treatmentLev 0.039682347 0.240582353 -0.43185907 0.51122376 8.689889e-01
treatmentLev.5FU 0.929566117 0.331614795 0.27960112 1.57953111 5.060608e-03
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.709026e+11 4.467109286 12.63616646 2.709026e+11 2.709026e+11
2 185 6.922368e-01 0.010411105 0.02969737 2.331295e-01 3.958395e-01
3 200 6.254847e-01 0.009930377 0.02601043 2.405824e-01 3.316148e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -5.309690e+11 -9.15742308 -18.5042411 -5.309690e+11 -5.309690e+11
2 185 1.279323e+00 -0.02759102 -0.1374495 -3.554978e-01 2.712195e-01
3 200 1.266659e+00 -0.02544451 -0.1257285 -4.318591e-01 2.796011e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 5.309690e+11 8.35364532 31.02953148 5.309690e+11 5.309690e+11
2 185 3.992891e+00 0.01322051 -0.02103580 5.583699e-01 1.822910e+00
3 200 3.718559e+00 0.01348257 -0.02376766 5.112238e-01 1.579531e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.000000e+00 0.9283141 0.620167656 1.0000000 0.999999997
2 185 1.400389e-04 0.4900982 0.007622732 0.6634854 0.008164858
3 200 6.745613e-05 0.5469809 0.004055989 0.8689889 0.005060608
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11648 (sockconn)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64