Last updated on 2023-01-25 04:51:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 49.08 | 235.76 | 284.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 35.27 | 166.66 | 201.93 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 338.51 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 331.57 | ERROR | |||
| r-patched-linux-x86_64 | 2.1.0 | 38.85 | 217.18 | 256.03 | OK | |
| r-release-linux-x86_64 | 2.1.0 | 27.95 | 218.27 | 246.22 | OK | |
| r-release-macos-arm64 | 2.1.0 | 81.00 | OK | |||
| r-release-macos-x86_64 | 2.1.0 | 145.00 | OK | |||
| r-release-windows-x86_64 | 2.1.0 | 60.00 | 238.00 | 298.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.0 | 84.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.0 | 138.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.1.0 | 116.00 | 250.00 | 366.00 | OK |
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [98s/66s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nandb)
>
> if (!nandb:::win32bit()) test_check("nandb")
Starting 2 test processes
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 128 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-brightness.R:50'): brightness_folder works ─────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, brightness_file, def = def, thresh = thresh,
detrend = detrend, quick = quick, filt = filt, s = s, offset = offset,
readout_noise = readout_noise, parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─base::suppressMessages(brightness_folder(def = "b", detrend = FALSE)) at test-brightness.R:50:2
2. │ └─base::withCallingHandlers(...)
3. ├─nandb::brightness_folder(def = "b", detrend = FALSE)
4. │ ├─... %>% invisible()
5. │ └─purrr::map(...)
6. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─nandb (local) .f(.x[[i]], ...)
11. │ └─... %>% deduplicate_nb_filename()
12. ├─nandb:::deduplicate_nb_filename(.)
13. │ └─checkmate::assert_string(path)
14. │ └─checkmate::checkString(...)
15. │ └─... %and% ...
16. │ └─base::isTRUE(lhs)
17. ├─base::paste0("brightness", "/", ., make_nb_filename_ending(b))
18. ├─filesstrings::before_last_dot(.)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error ('test-brightness.R:172'): brightness_timeseries works ────────────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file 50.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "50.tif", msg = FALSE) at test-brightness.R:172:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-cc_brightness.R:152'): cc_brightness_folder() works ────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, cc_brightness_file, ch1 = ch1, ch2 = ch2,
thresh = thresh, detrend = detrend, quick = quick, filt = filt,
parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─nandb::cc_brightness_folder(thresh = "Huang", detrend = FALSE) at test-cc_brightness.R:152:2
2. │ ├─... %>% invisible()
3. │ └─purrr::map(...)
4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─nandb (local) .f(.x[[i]], ...)
9. │ └─... %>% deduplicate_cc_nb_filename()
10. ├─nandb:::deduplicate_cc_nb_filename(.)
11. │ └─checkmate::assert_string(path)
12. │ └─checkmate::checkString(...)
13. │ └─... %and% ...
14. │ └─base::isTRUE(lhs)
15. ├─base::paste0("cc_brightness", "/", ., make_cc_nb_filename_ending(cc_b))
16. ├─filesstrings::before_last_dot(.)
17. └─base::.handleSimpleError(...)
18. └─purrr (local) h(simpleError(msg, call))
19. └─cli::cli_abort(...)
20. └─rlang::abort(...)
── Error ('test-cc_brightness.R:175'): cc_brightness_timeseries_folder() works ──
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file a.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "a.tif", msg = FALSE) at test-cc_brightness.R:175:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-cc_number.R:156'): cc_number_folder() works ────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, cc_number_file, ch1 = ch1, ch2 = ch2,
thresh = thresh, detrend = detrend, quick = quick, filt = filt,
parallel = parallel)`: i In index: 1.
Caused by error in `custom_stop()`:
! You have requested to use channel 2, but your image has only 1 channel in total.
* This is not possible. Please retry with valid channel numbers.
── Error ('test-cc_number.R:180'): cc_number_timeseries_folder() works ─────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file a.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "a.tif", msg = FALSE) at test-cc_number.R:180:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-number.R:49'): number_folder works ─────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, number_file, def = def, thresh = thresh,
detrend = detrend, quick = quick, filt = filt, s = s, offset = offset,
readout_noise = readout_noise, gamma = gamma, parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─nandb::number_folder(def = "N", detrend = FALSE) at test-number.R:49:2
2. │ ├─... %>% invisible()
3. │ └─purrr::map(...)
4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─nandb (local) .f(.x[[i]], ...)
9. │ └─... %>% deduplicate_nb_filename()
10. ├─nandb:::deduplicate_nb_filename(.)
11. │ └─checkmate::assert_string(path)
12. │ └─checkmate::checkString(...)
13. │ └─... %and% ...
14. │ └─base::isTRUE(lhs)
15. ├─base::paste0("number", "/", ., make_nb_filename_ending(num))
16. ├─filesstrings::before_last_dot(.)
17. └─base::.handleSimpleError(...)
18. └─purrr (local) h(simpleError(msg, call))
19. └─cli::cli_abort(...)
20. └─rlang::abort(...)
── Error ('test-number.R:168'): number_timeseries works ────────────────────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file 50.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "50.tif", msg = FALSE) at test-number.R:168:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 128 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [100s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nandb)
>
> if (!nandb:::win32bit()) test_check("nandb")
Starting 2 test processes
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 128 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-brightness.R:50'): brightness_folder works ─────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, brightness_file, def = def, thresh = thresh,
detrend = detrend, quick = quick, filt = filt, s = s, offset = offset,
readout_noise = readout_noise, parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─base::suppressMessages(brightness_folder(def = "b", detrend = FALSE)) at test-brightness.R:50:2
2. │ └─base::withCallingHandlers(...)
3. ├─nandb::brightness_folder(def = "b", detrend = FALSE)
4. │ ├─... %>% invisible()
5. │ └─purrr::map(...)
6. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─nandb (local) .f(.x[[i]], ...)
11. │ └─... %>% deduplicate_nb_filename()
12. ├─nandb:::deduplicate_nb_filename(.)
13. │ └─checkmate::assert_string(path)
14. │ └─checkmate::checkString(...)
15. │ └─... %and% ...
16. │ └─base::isTRUE(lhs)
17. ├─base::paste0("brightness", "/", ., make_nb_filename_ending(b))
18. ├─filesstrings::before_last_dot(.)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error ('test-brightness.R:172'): brightness_timeseries works ────────────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file 50.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "50.tif", msg = FALSE) at test-brightness.R:172:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-cc_brightness.R:152'): cc_brightness_folder() works ────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, cc_brightness_file, ch1 = ch1, ch2 = ch2,
thresh = thresh, detrend = detrend, quick = quick, filt = filt,
parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─nandb::cc_brightness_folder(thresh = "Huang", detrend = FALSE) at test-cc_brightness.R:152:2
2. │ ├─... %>% invisible()
3. │ └─purrr::map(...)
4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─nandb (local) .f(.x[[i]], ...)
9. │ └─... %>% deduplicate_cc_nb_filename()
10. ├─nandb:::deduplicate_cc_nb_filename(.)
11. │ └─checkmate::assert_string(path)
12. │ └─checkmate::checkString(...)
13. │ └─... %and% ...
14. │ └─base::isTRUE(lhs)
15. ├─base::paste0("cc_brightness", "/", ., make_cc_nb_filename_ending(cc_b))
16. ├─filesstrings::before_last_dot(.)
17. └─base::.handleSimpleError(...)
18. └─purrr (local) h(simpleError(msg, call))
19. └─cli::cli_abort(...)
20. └─rlang::abort(...)
── Error ('test-cc_brightness.R:175'): cc_brightness_timeseries_folder() works ──
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file a.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "a.tif", msg = FALSE) at test-cc_brightness.R:175:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-number.R:49'): number_folder works ─────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, number_file, def = def, thresh = thresh,
detrend = detrend, quick = quick, filt = filt, s = s, offset = offset,
readout_noise = readout_noise, gamma = gamma, parallel = parallel)`: i In index: 1.
Caused by error in `string %>% tools::file_path_sans_ext() %T>% {
.[(string == .) & (str_elem(., 1) == ".")] <- ""
}`:
! could not find function "%T>%"
Backtrace:
▆
1. ├─nandb::number_folder(def = "N", detrend = FALSE) at test-number.R:49:2
2. │ ├─... %>% invisible()
3. │ └─purrr::map(...)
4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─nandb (local) .f(.x[[i]], ...)
9. │ └─... %>% deduplicate_nb_filename()
10. ├─nandb:::deduplicate_nb_filename(.)
11. │ └─checkmate::assert_string(path)
12. │ └─checkmate::checkString(...)
13. │ └─... %and% ...
14. │ └─base::isTRUE(lhs)
15. ├─base::paste0("number", "/", ., make_nb_filename_ending(num))
16. ├─filesstrings::before_last_dot(.)
17. └─base::.handleSimpleError(...)
18. └─purrr (local) h(simpleError(msg, call))
19. └─cli::cli_abort(...)
20. └─rlang::abort(...)
── Error ('test-number.R:168'): number_timeseries works ────────────────────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file 50.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "50.tif", msg = FALSE) at test-number.R:168:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
── Error ('test-cc_number.R:156'): cc_number_folder() works ────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `purrr::map(file_names, cc_number_file, ch1 = ch1, ch2 = ch2,
thresh = thresh, detrend = detrend, quick = quick, filt = filt,
parallel = parallel)`: i In index: 1.
Caused by error in `custom_stop()`:
! You have requested to use channel 2, but your image has only 1 channel in total.
* This is not possible. Please retry with valid channel numbers.
── Error ('test-cc_number.R:180'): cc_number_timeseries_folder() works ─────────
Error in `argchk_write_tif(img = img, path = path, bits_per_sample = bits_per_sample,
compression = compression, overwrite = overwrite, msg = msg)`: The file a.tif, already exists and `overwrite` is set to `FALSE`.
x To enable overwriting, use `overwrite = TRUE`.
Backtrace:
▆
1. └─ijtiff::write_tif(img, "a.tif", msg = FALSE) at test-cc_number.R:180:2
2. ├─... %<-% ...
3. │ ├─base::tryCatch(...)
4. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. │ │ ├─base (local) tryCatchOne(...)
6. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
7. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
8. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. │ └─zeallot:::multi_assign(substitute(x), value, parent.frame())
11. └─ijtiff:::argchk_write_tif(...)
12. └─rlang::abort(...)
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 128 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc