CRAN Package Check Results for Package seqminer

Last updated on 2023-01-25 04:51:48 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 8.5 100.63 39.25 139.88 WARN
r-devel-linux-x86_64-debian-gcc 8.5 91.69 30.34 122.03 WARN
r-devel-linux-x86_64-fedora-clang 8.5 232.26 WARN
r-devel-linux-x86_64-fedora-gcc 8.5 200.69 WARN
r-patched-linux-x86_64 8.5 97.24 34.52 131.76 NOTE
r-release-linux-x86_64 8.5 94.24 35.40 129.64 NOTE
r-release-macos-arm64 8.5 87.00 NOTE
r-release-macos-x86_64 8.5 90.00 NOTE
r-release-windows-x86_64 8.5 332.00 113.00 445.00 NOTE
r-oldrel-macos-arm64 8.5 91.00 NOTE
r-oldrel-macos-x86_64 8.5 96.00 NOTE
r-oldrel-windows-ix86+x86_64 8.5 552.00 97.00 649.00 NOTE

Additional issues

gcc12 M1mac

Check Details

Version: 8.5
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 8.5
Check: compiled code
Result: WARN
    File ‘seqminer/libs/seqminer.so’:
     Found ‘__sprintf_chk’, possibly from ‘sprintf’ (C)
     Object: ‘knetfile.o’
     Found ‘sprintf’, possibly from ‘sprintf’ (C)
     Objects: ‘Rannotation.o’, ‘bgen2genoLoader.o’, ‘rvMetaLoader.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs nor [v]sprintf.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 8.5
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     BGenFile.cpp:12:55: warning: member ‘BGenFile::N’ is used uninitialized [-Wuninitialized]
    See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/seqminer.Rcheck/00install.out’ for details.
    * used C compiler: ‘gcc-12 (Debian 12.2.0-14) 12.2.0’
    * used C++ compiler: ‘g++-12 (Debian 12.2.0-14) 12.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 8.5
Check: compiled code
Result: WARN
    File ‘seqminer/libs/seqminer.so’:
     Found ‘__sprintf_chk’, possibly from ‘sprintf’ (C)
     Objects: ‘Rannotation.o’, ‘bgen2genoLoader.o’, ‘knetfile.o’,
     ‘rvMetaLoader.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs nor [v]sprintf.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc

Version: 8.5
Check: compiled code
Result: WARN
    File ‘seqminer/libs/seqminer.so’:
     Found ‘sprintf’, possibly from ‘sprintf’ (C)
     Objects: ‘Rannotation.o’, ‘bgen2genoLoader.o’, ‘knetfile.o’,
     ‘rvMetaLoader.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs nor [v]sprintf.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 8.5
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     BGenFile.cpp:12:55: warning: member ‘BGenFile::N’ is used uninitialized [-Wuninitialized]
    See ‘/data/gannet/ripley/R/packages/tests-devel/seqminer.Rcheck/00install.out’ for details.
    * used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
    * used C++ compiler: ‘g++ (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 8.5
Check: installed package size
Result: NOTE
     installed size is 19.2Mb
     sub-directories of 1Mb or more:
     libs 17.7Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64