CRAN Package Check Results for Package simcausal

Last updated on 2023-01-25 04:51:48 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.6 9.95 323.26 333.21 OK
r-devel-linux-x86_64-debian-gcc 0.5.6 9.18 230.58 239.76 OK
r-devel-linux-x86_64-fedora-clang 0.5.6 371.01 OK
r-devel-linux-x86_64-fedora-gcc 0.5.6 390.84 OK
r-patched-linux-x86_64 0.5.6 15.46 303.42 318.88 OK
r-release-linux-x86_64 0.5.6 8.00 301.29 309.29 OK
r-release-macos-arm64 0.5.6 112.00 OK
r-release-macos-x86_64 0.5.6 137.00 OK
r-release-windows-x86_64 0.5.6 51.00 421.00 472.00 OK
r-oldrel-macos-arm64 0.5.6 99.00 WARN
r-oldrel-macos-x86_64 0.5.6 128.00 WARN
r-oldrel-windows-ix86+x86_64 0.5.6 18.00 70.00 88.00 OK --no-examples --no-tests --no-vignettes

Check Details

Version: 0.5.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘simcausal_vignette.Rnw’ using knitr
    ...automatically assigning order attribute to some nodes...
    node race, order:1
    node W1, order:2
    node W2, order:3
    node W3, order:4
    node Anode, order:5
    node Y, order:6
    using the following vertex attributes:
    120.8NAdarkbluenone0
    using the following edge attributes:
    0.50.40.8black1
    simulating observed dataset from the DAG object
    simulating action-specific datasets for action(s): A1 A0
    data not specified, simulating full data
    no actions specified, sampling full data for ALL actions from the DAG
    evaluating the target on 1000 simulated samples per action
    data not specified, simulating full data
    no actions specified, sampling full data for ALL actions from the DAG
    evaluating the target on 1000 simulated samples per action
    MSM: fitting glm to full data
    All custom distributions defined in SimCausal:
    
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    existing node Y was modified
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    existing node Y was modified
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    node W3, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    node W3, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    Warning in setAction(actname = name, inputDAG = attr(DAG, "actions")[[name]], :
    
    Action: A1_th0; Attribute: theta.
    Scalar attribute value is overwritten by a vector of time-varying values.
    
    Attaching package: 'ggplot2'
    
    The following object is masked _by_ '.GlobalEnv':
    
     %+%
    
    Loading required package: lattice
    Loading required package: survival
    Loading required package: Formula
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Error: processing vignette 'simcausal_vignette.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'simcausal_vignette.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    <template> ...@setup \CT@row@color \CT@cell@color
     \CT@do@color \endgroup \@t...
    l.179 \begin{document}
    
    ! Emergency stop.
    <template> ...@setup \CT@row@color \CT@cell@color
     \CT@do@color \endgroup \@t...
    l.179 \begin{document}
    
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘simcausal_vignette.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘simcausal_vignette.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-arm64

Version: 0.5.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘simcausal_vignette.Rnw’ using knitr
    ...automatically assigning order attribute to some nodes...
    node race, order:1
    node W1, order:2
    node W2, order:3
    node W3, order:4
    node Anode, order:5
    node Y, order:6
    using the following vertex attributes:
    120.8NAdarkbluenone0
    using the following edge attributes:
    0.50.40.8black1
    !!! Error: Ghostscript exited with error code 127!
    Warning in system2("pdfcrop", shQuote(c(x, x)), stdout = if (quiet) FALSE else "") :
     error in running command
    simulating observed dataset from the DAG object
    simulating action-specific datasets for action(s): A1 A0
    data not specified, simulating full data
    no actions specified, sampling full data for ALL actions from the DAG
    evaluating the target on 1000 simulated samples per action
    data not specified, simulating full data
    no actions specified, sampling full data for ALL actions from the DAG
    evaluating the target on 1000 simulated samples per action
    MSM: fitting glm to full data
    All custom distributions defined in SimCausal:
    
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    existing node Y was modified
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    existing node Y was modified
    ...automatically assigning order attribute to some nodes...
    node W, order:1
    node Anode, order:2
    node Y, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    node W3, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    node W3, order:3
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    ...automatically assigning order attribute to some nodes...
    node W1, order:1
    node W2, order:2
    !!! Error: Ghostscript exited with error code 127!
    Warning in system2("pdfcrop", shQuote(c(x, x)), stdout = if (quiet) FALSE else "") :
     error in running command
    !!! Error: Ghostscript exited with error code 127!
    Warning in system2("pdfcrop", shQuote(c(x, x)), stdout = if (quiet) FALSE else "") :
     error in running command
    !!! Error: Ghostscript exited with error code 127!
    Warning in system2("pdfcrop", shQuote(c(x, x)), stdout = if (quiet) FALSE else "") :
     error in running command
    Warning in setAction(actname = name, inputDAG = attr(DAG, "actions")[[name]], :
    
    Action: A1_th0; Attribute: theta.
    Scalar attribute value is overwritten by a vector of time-varying values.
    !!! Error: Ghostscript exited with error code 127!
    Warning in system2("pdfcrop", shQuote(c(x, x)), stdout = if (quiet) FALSE else "") :
     error in running command
    
    Attaching package: 'ggplot2'
    
    The following object is masked _by_ '.GlobalEnv':
    
     %+%
    
    Loading required package: lattice
    Loading required package: survival
    Loading required package: Formula
    
    Attaching package: 'Hmisc'
    
    The following objects are masked from 'package:base':
    
     format.pval, units
    
    Error: processing vignette 'simcausal_vignette.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'simcausal_vignette.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    <template> ...@setup \CT@row@color \CT@cell@color
     \CT@do@color \endgroup \@t...
    l.179 \begin{document}
    
    ! Emergency stop.
    <template> ...@setup \CT@row@color \CT@cell@color
     \CT@do@color \endgroup \@t...
    l.179 \begin{document}
    
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘simcausal_vignette.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘simcausal_vignette.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64