Last updated on 2023-01-25 04:51:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 14.53 | 185.12 | 199.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 12.32 | 131.05 | 143.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 234.43 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 242.56 | ERROR | |||
| r-patched-linux-x86_64 | 1.1.1 | 11.83 | 174.92 | 186.75 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 10.71 | 180.28 | 190.99 | OK | |
| r-release-macos-arm64 | 1.1.1 | 63.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 112.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 33.00 | 205.00 | 238.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 86.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 133.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.1.1 | 32.00 | 214.00 | 246.00 | OK |
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in ‘survtmle-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mean_tmle
> ### Title: TMLE for G-Computation of Cumulative Incidence
> ### Aliases: mean_tmle
>
> ### ** Examples
>
>
> ## Single failure type examples
> # simulate data
> set.seed(1234)
> n <- 100
> trt <- rbinom(n,1,0.5)
> adjustVars <- data.frame(W1 = round(runif(n)), W2 = round(runif(n, 0, 2)))
>
> ftime <- round(1 + runif(n, 1, 4) - trt + adjustVars$W1 + adjustVars$W2)
> ftype <- round(runif(n, 0, 1))
>
> # Fit 1 - fit mean_tmle object with GLMs for treatment, censoring, failure
> fit1 <- mean_tmle(ftime = ftime, ftype = ftype,
+ trt = trt, adjustVars = adjustVars,
+ glm.trt = "W1 + W2",
+ glm.ftime = "trt + W1 + W2",
+ glm.ctime = "trt + W1 + W2")
'speedglm' ran into an error in withCallingHandlers.'glm' will be used instead.
Error in seq.int(min(dim(R))) : 'from' must be a finite number
Calls: mean_tmle -> estimateIteratedMean
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in ‘survtmle-Ex.R’ failed
The error most likely occurred in:
> ### Name: mean_tmle
> ### Title: TMLE for G-Computation of Cumulative Incidence
> ### Aliases: mean_tmle
>
> ### ** Examples
>
>
> ## Single failure type examples
> # simulate data
> set.seed(1234)
> n <- 100
> trt <- rbinom(n,1,0.5)
> adjustVars <- data.frame(W1 = round(runif(n)), W2 = round(runif(n, 0, 2)))
>
> ftime <- round(1 + runif(n, 1, 4) - trt + adjustVars$W1 + adjustVars$W2)
> ftype <- round(runif(n, 0, 1))
>
> # Fit 1 - fit mean_tmle object with GLMs for treatment, censoring, failure
> fit1 <- mean_tmle(ftime = ftime, ftype = ftype,
+ trt = trt, adjustVars = adjustVars,
+ glm.trt = "W1 + W2",
+ glm.ftime = "trt + W1 + W2",
+ glm.ctime = "trt + W1 + W2")
'speedglm' ran into an error in withCallingHandlers.'glm' will be used instead.
Error in seq.int(min(dim(R))) : 'from' must be a finite number
Calls: mean_tmle -> estimateIteratedMean
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc