Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. The method is presented in details in Plagnol et al (2012) <https://pubmed.ncbi.nlm.nih.gov/22942019/>.
| Version: | 1.1.16 |
| Depends: | R (≥ 3.4.0) |
| Imports: | Biostrings, IRanges, Rsamtools, GenomicRanges (≥ 1.23.0), aod, VGAM (≥ 0.8.4), methods, GenomicAlignments, dplyr, magrittr |
| Suggests: | knitr |
| Published: | 2022-11-03 |
| Author: | Vincent Plagnol [aut, cre],
Gerard Jungman [ctb] (Author of included GSL fragments),
Brian Gough [ctb] (Author of included GSL fragments),
Jorma O Tahtinen [ctb] (Author of included GSL fragments),
Gert Van den Eynde [ctb] (Author of included GSL fragments) ExomeDepth author details |
| Maintainer: | Vincent Plagnol <vincent.plagnol at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| CRAN checks: | ExomeDepth results |
| Reference manual: | ExomeDepth.pdf |
| Vignettes: |
ExomeDepth |
| Package source: | ExomeDepth_1.1.16.tar.gz |
| Windows binaries: | r-devel: ExomeDepth_1.1.16.zip, r-release: ExomeDepth_1.1.16.zip, r-oldrel: ExomeDepth_1.1.16.zip |
| macOS binaries: | r-release (arm64): ExomeDepth_1.1.16.tgz, r-oldrel (arm64): ExomeDepth_1.1.16.tgz, r-release (x86_64): ExomeDepth_1.1.16.tgz, r-oldrel (x86_64): ExomeDepth_1.1.16.tgz |
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