All changes to TDApplied are documented here.

Additions referenced with relevant GitHub Issue or Pull Request number. Please see those for more details.

2.0.3

• fixed bootstrap reference in vignette

2.0.2

• set seed in vignette for reproducibility (which is reset at the end)
• added more examples of TDA applications in publications

2.0.1

• increased testing coverage
• fixed issue with th parameter in diagram_kpca
• fixed issue with gamma distribution in independence_test
• added applied analysis of TDApplied on HCP data to package vignette

2.0.0

• added PyH function for fast persistence diagram calculations with python
• added bootstrap_persistence_thresholds for finding “real” topological features in a data set
• added plot_diagram function for plotting persistence diagrams, with or without persistence thresholds
• fixed problem with diagram_distance in which one of the two diagrams was empty in the desired dimension

0.1.3

• fixed small bug with computing mean cv model error for svm
• added tryCatch’s around parallelized code to ensure that clusters are closed even when errors occur

0.1.2

• fixed bug with mds test and properly cleaned up parallelization clusters

0.1.1

• Fixed bug with one diagram_mds test, although code was working properly

0.1.0

• Initial version