UCSCXenaShiny: Interactive Analysis of UCSC Xena Data
Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
| Version: | 1.1.9 |
| Depends: | R (≥ 3.5) |
| Imports: | dplyr (≥ 0.8.3), ezcox, forcats, ggplot2 (≥ 3.2.0), ggpubr (≥ 0.2), magrittr (≥ 1.5), ppcor, psych, purrr, shiny (≥ 1.3.2), stats, stringr, tibble (≥ 2.1.3), tidyr, UCSCXenaTools, utils |
| Suggests: | covr (≥ 3.2.1), cowplot, DT (≥ 0.5), furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer (≥ 1.1.2), rmarkdown, scales, survival, survminer, testthat (≥ 2.0.1) |
| Published: | 2022-12-12 |
| Author: | Shixiang Wang 
[aut, cre],
Yi Xiong [aut],
Longfei Zhao
[aut],
Kai Gu [aut],
Yin Li [aut],
Fei Zhao [aut] |
| Maintainer: | Shixiang Wang <w_shixiang at 163.com> |
| BugReports: | https://github.com/openbiox/UCSCXenaShiny/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/openbiox/UCSCXenaShiny |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | UCSCXenaShiny results |
Documentation:
| Reference manual: | UCSCXenaShiny.pdf |
| Vignettes: |
Accessible Functions |
Downloads:
| Package source: | UCSCXenaShiny_1.1.9.tar.gz |
| Windows binaries: | r-devel: UCSCXenaShiny_1.1.9.zip, r-release: UCSCXenaShiny_1.1.9.zip, r-oldrel: UCSCXenaShiny_1.1.9.zip |
| macOS binaries: | r-release (arm64): UCSCXenaShiny_1.1.9.tgz, r-oldrel (arm64): UCSCXenaShiny_1.1.9.tgz, r-release (x86_64): UCSCXenaShiny_1.1.9.tgz, r-oldrel (x86_64): UCSCXenaShiny_1.1.9.tgz |
| Old sources: | UCSCXenaShiny archive |
Linking:
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