gadget3: Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3
A framework to assist creation of marine ecosystem models, generating either 'R' or 'C++' code which can then be optimised using the 'TMB' package and standard 'R' tools. Principally designed to reproduce gadget2 models in 'TMB', but can be extended beyond gadget2's capabilities. Kasper Kristensen, Anders Nielsen, Casper W. Berg, Hans Skaug, Bradley M. Bell (2016) <doi:10.18637/jss.v070.i05> "TMB: Automatic Differentiation and Laplace Approximation.". Begley, J., & Howell, D. (2004) <https://core.ac.uk/download/pdf/225936648.pdf> "An overview of Gadget, the globally applicable area-disaggregated general ecosystem toolbox. ICES.".
| Version: | 0.8-4 |
| Depends: | R (≥ 3.6.0) |
| Imports: | digest, Matrix (≥ 1.2-0), rlang (≥ 0.4.5), stats, TMB (≥ 1.7.0), utils |
| Suggests: | knitr, magrittr (≥ 1.5), rmarkdown, unittest (≥ 1.4) |
| Published: | 2022-12-09 |
| Author: | Jamie Lentin 
[aut, cre],
Bjarki Thor Elvarsson
[aut],
William Butler
[aut],
Marine and Freshwater Research Institute (Iceland) [cph] |
| Maintainer: | Jamie Lentin <lentinj at shuttlethread.com> |
| License: | GPL-2 |
| URL: | https://gadget-framework.github.io/gadget3/, https://github.com/gadget-framework/gadget3/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | gadget3 results |
Documentation:
| Reference manual: | gadget3.pdf |
| Vignettes: |
Model Debugging Model Structure TMB Gotchas Writing G3 Actions |
Downloads:
| Package source: | gadget3_0.8-4.tar.gz |
| Windows binaries: | r-devel: gadget3_0.8-4.zip, r-release: gadget3_0.8-4.zip, r-oldrel: gadget3_0.8-4.zip |
| macOS binaries: | r-release (arm64): gadget3_0.8-4.tgz, r-oldrel (arm64): gadget3_0.8-4.tgz, r-release (x86_64): gadget3_0.8-4.tgz, r-oldrel (x86_64): gadget3_0.8-4.tgz |
Linking:
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