genekitr: Gene Analysis Toolkit
An analysis toolkit focused on genes. It mainly includes five
features (search, convert, analysis, plot, and export).
The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or
'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records,
to convert id types, to easily handle gene enrichment analysis and publication-level figures,
to plot group interaction and export results as sheets in one 'excel'
file to easily share and communicate with others.
| Version: |
1.1.0 |
| Depends: |
R (≥ 3.6) |
| Imports: |
clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2, ggraph, igraph, magrittr, openxlsx, stringr, stringi, tidyr, VennDiagram, rlang |
| Suggests: |
AnnotationDbi, BiocManager, cowplot, ComplexUpset, data.table, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, labeling, msigdbr, pheatmap, tm, treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, wordcloud, knitr, rmarkdown |
| Published: |
2023-01-20 |
| Author: |
Yunze Liu  [aut,
cre] |
| Maintainer: |
Yunze Liu <jieandze1314 at gmail.com> |
| BugReports: |
https://github.com/GangLiLab/genekitr/issues |
| License: |
GPL-3 |
| URL: |
https://www.genekitr.fun/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
genekitr results |
Documentation:
Downloads:
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