palmid 0.0.3
- Initial release.
palmid is a containerized analysis
suite and R-package for the classification of viral
RNA-dependent RNA Polymerases (RdRP) based on the
palmprint sub-domain and the RNA viral palmprint
database palmdb.
Features
- Reading of
palmscan and
palmDB/DIAMOND-based alignment output
files.
- Automated access to the Serratus SQL-server and cross-database
analysis of input sequences.
- Taxonomic inference of input viral sequencing based on RdRP protein
identity.
- Geospatial and temporal analysis of virus-sequence matches.
- Virus-associated host organism analysis of the Sequence Read
Archive.
- Containerized work environment for reproducible deployment.