R package predict3d aims to draw predicts plot for
various regression models. The main two functions are ggPredict() for
2-dimensional plot and predict3d() for 3-dimensional plot.
You can install predict3d package from CRAN.
install.packages("predict3d")You can install the developmental version of predict3d
package from github.
if(!require(devtools)) install.packages("devtools")
devtools::install_github("cardiomoon/predict3d"")You can draw linear regression models. First model has one categorical and one continuous explanatory variables.
require(predict3d)
require(rgl)
fit1=lm(Sepal.Length~Sepal.Width*Species,data=iris)
fit1
Call:
lm(formula = Sepal.Length ~ Sepal.Width * Species, data = iris)
Coefficients:
(Intercept) Sepal.Width
2.6390 0.6905
Speciesversicolor Speciesvirginica
0.9007 1.2678
Sepal.Width:Speciesversicolor Sepal.Width:Speciesvirginica
0.1746 0.2110 You can draw plot for this model. ggPredict() function draws a scatterplot with regression line and shows regression equations parallel to the regression lines.
ggPredict(fit1,digits=1)
predict3d(fit1,radius=0.05)
rglwidget(elementId = "1st")
You can see the live 3d plot at http://rpubs.com/cardiomoon/471347.
The second model has two continuous variables as explanatory variables. You can change the labels and the relative x position and the y position.
fit2=lm(mpg~wt*hp,data=mtcars)
ggPredict(fit2,labels=paste0("label",1:3),xpos=c(0.3,0.4,0.3))
predict3d(fit2)
rglwidget(elementId = "2nd")
You can draw generalized linear models.
require(TH.data)
fit3=glm(cens~pnodes*age*horTh,data=GBSG2,family=binomial)
ggPredict(fit3,se=TRUE,show.text = FALSE)
predict3d(fit3,radius=0.5)
rglwidget(elementId = "3rd")
You can draw the loess model.
fit=loess(mpg~hp*wt,data=mtcars)
ggPredict(fit)
predict3d(fit,radius=2)
rglwidget(elementId = "4th")
Once you have create a model with predict3d(), you can move your object with your mouse or R codes. For example, You can rotate you object with this R codes.
start <- proc.time()[3]
while ((i <- 36*(proc.time()[3] - start)) < 360) {
rgl.viewpoint(i, i/4);
}
play3d(spin3d(axis = c(1, 0, 0), rpm = 30), duration = 2)You can save your 3d plot as a figure file or pdf file.
rgl.bringtotop()
rgl.snapshot("fig1.png")
rgl.postscript("fig2.pdf","pdf")For more information about package rgl, please read the
package vignette at:
https://CRAN.R-project.org/package=rgl/vignettes/rgl.html
You can see the following vignettes published on rpubs.com