Major changes:
run_wavelet to isolate wavelet kernels for each
subject, requires to update ravetoolsravetools options when loading the
packageclean method to pipeline to clean
the data objectspipelines to save and load customized data to
avoid polluting the settings.yamlpipelines to eval instead of
runraw-voltage to method
load_blocks (class LFP_electrode) to load the
raw voltage dataprepare_subject_bare0 to load subject that with
only voltage data imported (before Notch filters).nev converter to export BlackRock
format to Matlab or HDF5 formatsMinor changes:
FLIRT script to perform less search to speed
upMNI305_to_MNI152 matrixquiet option when loading electrodes to suppress
warningsravetools whenever possibleBlackRock.nev headers
to shorten loading timeBug fixes:
watchdog when electrode table is unavailablerand_string not random when running with
multicore future parallelpreprocess_file path in class
LFP_electrode.nev converter bugs causing index overflows in
some casesMajor changes:
RAVE 1.0 and 2.0 formatsBlackRock (NEV,
NSx) formats with specification number
(>=2.2)targets to avoid
serializing large objectsRAVEWatchDog that can
automatically monitor NEV and NSx files,
import & process datamerge_subjects to merge multiple subjects from
the same project but different blocksrecon-all, dcm2niix,
3dAllineate, and flirt shell-commands
(requires external programs to be installed)Minor changes:
Bug fixes:
generate_reference set array to read-only mode
before saving headersMajor changes:
PipelineTools class and wrapped constructor
raveio::pipeline to load common utility tools needed to run
the pipelineRAVE-2.0import_electrode_table to import table without
replacing existing electrode files with dry_run optionMajor changes:
read_mat2 to allow reading Matlab
files stored in HDF5 formatsset_default and get_default
methodsmulticore by default, so users can use their
own plan provided by the future packagepower_baseline
directly from repositoryRAVE subjects with
identical key as signaturewith_future_parallel to enable
multicore features in the expressionsravedash log system provided if the package is
installedraveio_getopt and
raveio_setoptvalidate_time_window to return intervals of time
windowssave_json and load_json to handle
JSON format using jsonlite packagethreeBrain template brainimport_electrode_table to import electrode table
with coordinates in T1 or MNI space to
tkrRASnormalize_commandline_path and cmd_*
functions to search for external system commands such as
FreeSurfer, FSL-FLIRT,
dcm2niixbackup_file to back up existing files instead of
overwritingrave-server as services
(currently only works on OSX)Changes to pipeline framework:
async mode works in shiny
applicationsR6 class for pipeline results in
promises wayAsync pipelines can have callback functions at each
check, useful for monitoring the progressEnhancements:
save_yaml can write to connectionsrave_imports runs in parallel in native2
formatOSX and Linux)EDF files to be partially readravetools respects tensor_temp_path as its
temporary pathMajor changes:
hdf5r as it passes the CRAN
checks nowHDF5 bugsRAVEMajor changes:
lazyarray, pryrget_ram errors when system command not foundSolarishdf5r to rhdf5Initial CRAN submission.